PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G022452.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family MYB
Protein Properties Length: 316aa    MW: 36311.2 Da    PI: 5.2272
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G022452.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding445.2e-141461148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          +g W++eEd++l  ++k++G  +W+  ++  g+ R++k+c++rw +yl
  HL.SW.v1.0.G022452.1 14 KGVWSPEEDLKLRSYIKKYGIWNWSEMSKAAGLVRSGKSCRLRWMNYL 61
                          799*****************99**********99************97 PP
2Myb_DNA-binding51.22.8e-1668112248
                           SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                           g+++ eE e +v +++ lG++ W++Ia++++ gRt++++k++w+++l
  HL.SW.v1.0.G022452.1  68 GNFSHEEKETIVTLHETLGNR-WSAIAAKLP-GRTDNEVKNYWHTHL 112
                           89*******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-22664IPR009057Homeodomain-like
PROSITE profilePS5129414.227961IPR017930Myb domain
SuperFamilySSF466891.65E-2812108IPR009057Homeodomain-like
SMARTSM007171.9E-121363IPR001005SANT/Myb domain
PfamPF002491.7E-121461IPR001005SANT/Myb domain
CDDcd001676.33E-101761No hitNo description
PROSITE profilePS5129422.93762116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.6E-2565115IPR009057Homeodomain-like
SMARTSM007172.5E-1566114IPR001005SANT/Myb domain
PfamPF002491.7E-1468112IPR001005SANT/Myb domain
CDDcd001671.75E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MVKTWRCEKT HLKKGVWSPE EDLKLRSYIK KYGIWNWSEM SKAAGLVRSG KSCRLRWMNY  60
LRPDIKHGNF SHEEKETIVT LHETLGNRWS AIAAKLPGRT DNEVKNYWHT HLKKRFYKQM  120
QDSSSTSTVL GMESEPNLND EAGSDDQNKI INSLSESATD QLSVPHEPLI SSKLESSSQD  180
NELIISTQDF PSAVLVTSAP TNHEFGNIRR DIGQNEVINT ESNNNEITVS NNQSQTFEEI  240
HHCLWTAQVP VVNNGGFETQ EDHAYQGIFM DDHMHPNYGQ FMGPSSSISE TMWPYDLYEY  300
EYVCNDWVNY MDNIF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-24121165108B-MYB
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2P5EJS01e-110A0A2P5EJS0_TREOI; MYB transcription factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.12e-55myb domain protein 14