PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G022516.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family MYB
Protein Properties Length: 282aa    MW: 32556.8 Da    PI: 5.3521
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G022516.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.31.5e-171461148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          +g+WT eEd++l+ +++++G g+W++ ++  g+ R++k+c++rw +yl
  HL.SW.v1.0.G022516.1 14 KGPWTSEEDQILISYIQRYGHGNWRALPKQAGLLRCGKSCRLRWINYL 61
                          79******************************99************97 PP
2Myb_DNA-binding54.52.7e-1767112148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                           rg++T eE+e ++d++++lG++ W++Ia++++ gRt++++k+ w+++l
  HL.SW.v1.0.G022516.1  67 RGNFTREEEETIIDLHEMLGNR-WSAIAARLP-GRTDNEIKNVWHTHL 112
                           89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-26564IPR009057Homeodomain-like
PROSITE profilePS5129416.992961IPR017930Myb domain
SuperFamilySSF466892.83E-3110108IPR009057Homeodomain-like
SMARTSM007175.1E-141363IPR001005SANT/Myb domain
PfamPF002494.5E-161461IPR001005SANT/Myb domain
CDDcd001671.34E-101661No hitNo description
PROSITE profilePS5129425.88562116IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.2E-2765116IPR009057Homeodomain-like
SMARTSM007175.3E-1566114IPR001005SANT/Myb domain
PfamPF002491.1E-1567112IPR001005SANT/Myb domain
CDDcd001671.41E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010200Biological Processresponse to chitin
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MGRAPCCEKM GLKKGPWTSE EDQILISYIQ RYGHGNWRAL PKQAGLLRCG KSCRLRWINY  60
LRPDIKRGNF TREEEETIID LHEMLGNRWS AIAARLPGRT DNEIKNVWHT HLKKRLSTTT  120
TQNNKNHHVV QKSKRQRHQQ SCDDDHQVIK NDYDNDDDTK YNNNIMITMD QDEENNNNNN  180
RPVVSSPADQ SSSSSFSTGD HDHNDIINVM DDDFWSEVFS SGEIINDHNT SNSEVLLDGL  240
SVNNQFSDHA LITTTNLDYD QDMDFWYNIF TRSADLPELL L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-29121185110B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1131136KSKRQR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00375DAPTransfer from AT3G23250Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015891267.14e-95transcription factor MYB13
TrEMBLA0A2P5CNN21e-102A0A2P5CNN2_PARAD; MYB transcription factor
STRINGcassava4.1_013493m2e-90(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.11e-82myb domain protein 14