PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G022544.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family ERF
Protein Properties Length: 286aa    MW: 32305.7 Da    PI: 6.0895
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G022544.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.81.8e-20134184255
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           +y+GVr+++ +g+++AeIrd s ng  +r++lg+f+taeeAa a+++a+++++g
  HL.SW.v1.0.G022544.1 134 HYRGVRRRP-WGKYAAEIRDSSRNG--ARVWLGTFDTAEEAALAYDKAALRIRG 184
                           7********.**********55465..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.5E-31133193IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-23134194IPR016177DNA-binding domain
PROSITE profilePS5103223.894134192IPR001471AP2/ERF domain
CDDcd000182.87E-30134192No hitNo description
SMARTSM003808.9E-38134198IPR001471AP2/ERF domain
PfamPF008471.3E-14134184IPR001471AP2/ERF domain
PRINTSPR003672.7E-11135146IPR001471AP2/ERF domain
PRINTSPR003672.7E-11158174IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MAAIHKGQQS EAILENVWAS FISGKEVKNE GKRLSKSWDD LPHLDGKEGS MEVLQRLPSL  60
GRWISMGAET WEELLDSIIV DPSSNLDHHD QHQQHSSTNN NTTANDDIDH DKESNSVERA  120
KKKTAAMVVA ATRHYRGVRR RPWGKYAAEI RDSSRNGARV WLGTFDTAEE AALAYDKAAL  180
RIRGTKAYLN FPLETVAKSN NKTTTATATT RCGKRESREW ENHQINYDHD QVMMTMMINQ  240
EPALRRSKAS SHDHENNTND DPFDVFEFQD LGSDYLDSLL SFPCD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-30130195166ATERF1
3gcc_A8e-30130195166ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00441DAPTransfer from AT4G18450Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024031507.16e-95ethylene-responsive transcription factor 1B
TrEMBLA0A2P5EBP21e-121A0A2P5EBP2_TREOI; AP2/ERF transcription factor
STRINGXP_008225440.13e-89(Prunus mume)
STRINGEOY281135e-89(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF95473142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18450.11e-27ERF family protein