PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G023259.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family MYB_related
Protein Properties Length: 310aa    MW: 33840.9 Da    PI: 8.5759
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G023259.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.92.4e-131495146
                          TSSS-HHHHHHHHHHHHHTTTT.....................................-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.....................................tWktIartmgkgRtlkqcksrwqk 46
                          rg+W+++Ed  l+ +v+ +G+g                                      W+ Ia+ +  gRt++++k++w++
  HL.SW.v1.0.G023259.1 14 RGPWSPDEDATLKTYVQTHGTGgnwialpkkagqtsntaalpkrktklfvtstakweagKWSIIASQLA-GRTDNDVKNYWNT 95
                          89*******************************************************************.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-20524IPR009057Homeodomain-like
PROSITE profilePS5129411.4319101IPR017930Myb domain
SuperFamilySSF466891.96E-111193IPR009057Homeodomain-like
SMARTSM007176.2E-141399IPR001005SANT/Myb domain
PfamPF002494.6E-61446IPR001005SANT/Myb domain
CDDcd001675.23E-71695No hitNo description
Gene3DG3DSA:1.10.10.603.4E-72558IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-2073106IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MGRAPCCDKA NVKRGPWSPD EDATLKTYVQ THGTGGNWIA LPKKAGQTSN TAALPKRKTK  60
LFVTSTAKWE AGKWSIIASQ LAGRTDNDVK NYWNTKLKKK LLAGKISLIT KPIPATPTRR  120
GRHHDLSASK PSFQTPCVPK LETHIENSSL FPIINSKTHH VHDQNMLSPS AHGTVDYNNP  180
GLSTSSVYDK GLSLINDPIM GFSDHDDQFG VNYLKKSRDS SIVDNGSIMS QEISAIWDSS  240
SNSMAASDHL NQKPASTTLS GVINGCDEYG AETTLMDFGF GLLPYDGSFE DKAYHSFSLA  300
DYQSIMNHY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2P5DTN01e-50A0A2P5DTN0_PARAD; Octamer-binding transcription factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36890.11e-36MYB family protein