PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G023270.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family HD-ZIP
Protein Properties Length: 195aa    MW: 22241.3 Da    PI: 10.5668
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G023270.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.11.5e-1859113256
                           T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
              Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                           +kR+t++k+qle Le+ F++  ++  +++ +L++ lgL+ rq+ vW+qN+Ra+ k
  HL.SW.v1.0.G023270.1  59 KKRRTLSKSQLESLERSFQEGVKLEPDKKMKLSRDLGLEPRQIAVWYQNKRARLK 113
                           89***************************************************98 PP
2HD-ZIP_I/II106.91.5e-3459150192
           HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                           +k+r lsk q+++LE+sF+e  kLep++K++l+r+Lgl+prq+avW+qn+RAR ktkq+E+ yeaLk+ +d++++e+++L+kev +L+ 
  HL.SW.v1.0.G023270.1  59 KKRRTLSKSQLESLERSFQEGVKLEPDKKMKLSRDLGLEPRQIAVWYQNKRARLKTKQIERSYEALKHDFDRMSKEKQKLQKEVVKLKC 147
                           46677**********************************************************************************99 PP

           HD-ZIP_I/II  90 elk 92 
                           +l+
  HL.SW.v1.0.G023270.1 148 KLR 150
                           887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.04E-1649117IPR009057Homeodomain-like
PROSITE profilePS5007116.09955115IPR001356Homeobox domain
SMARTSM003892.1E-1557119IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.6E-1759122IPR009057Homeodomain-like
CDDcd000862.02E-1259116No hitNo description
PfamPF000468.9E-1659113IPR001356Homeobox domain
PROSITE patternPS00027090113IPR017970Homeobox, conserved site
PfamPF021834.7E-9115149IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MDWNISNARR GVSRTGSSYG FPFHKDYDSH YQGMNRKPHQ LAILSETAQR LNVGPCMEKK  60
RRTLSKSQLE SLERSFQEGV KLEPDKKMKL SRDLGLEPRQ IAVWYQNKRA RLKTKQIERS  120
YEALKHDFDR MSKEKQKLQK EVVKLKCKLR DQNASGSKQV PMSGNSSMIS REDKAESTAD  180
AIISGSSNMS QGTN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015898574.11e-56putative homeobox-leucine zipper protein ATHB-51 isoform X1
TrEMBLA0A2P5FVQ03e-55A0A2P5FVQ0_TREOI; Octamer-binding transcription factor
STRINGXP_008241330.12e-52(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33943466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03790.14e-27homeobox 51