PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G023335.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family ERF
Protein Properties Length: 287aa    MW: 31129.9 Da    PI: 10.2532
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G023335.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.16e-20129178255
                   AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            y+GVr ++ +grW AeIrd       r r++lg+f+tae+Aa+a++aa+++l+g
  HL.SW.v1.0.G023335.1 129 SYRGVRKRP-WGRWSAEIRDrI----GRCRHWLGTFDTAEDAARAYDAAARRLRG 178
                           69*******.**********32....25*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.07E-16128187No hitNo description
PROSITE profilePS5103222.695129186IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-29129186IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-21129186IPR016177DNA-binding domain
PfamPF008471.6E-13129178IPR001471AP2/ERF domain
SMARTSM003805.1E-33129192IPR001471AP2/ERF domain
PRINTSPR003672.2E-10130141IPR001471AP2/ERF domain
PRINTSPR003672.2E-10152168IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MNTKASEPVS FFRIPEPLPP ETFRSILAET PSFYGSYWGA HLAISSISDQ AEPFHSQFYG  60
LNLAETVQNQ PHLPPPPSQA PSLDGIAAVV GEYVLFGGKT TEKSEPKTES SSFVSESLKK  120
SCTTAQSKSY RGVRKRPWGR WSAEIRDRIG RCRHWLGTFD TAEDAARAYD AAARRLRGSK  180
ARTNFEIPSV LPLVMPSSSA PTAATTSSGS SSSSAYSRRI GRRTKAAARN ASNRRKCSVV  240
TSPAQLFSDI NNIAPMVYYS GNRNTTSPVV ELDLKLGVTD GIRTST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-17125185162ATERF1
3gcc_A2e-17125185162ATERF1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2P5E6617e-80A0A2P5E661_TREOI; AP2/ERF domain containing protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130232631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80580.13e-21ERF family protein