PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G023500.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family B3
Protein Properties Length: 98aa    MW: 11076.9 Da    PI: 9.4887
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G023500.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.48.1e-1610861894
                          --HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                    B3 18 lpkkfaeehggkkeesktltledesgrsWevkliy..rkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94
                          +p +fa+eh ++ e+s  ++l  ++   W+vk+ +  +++s+r   ++ GWk F+k+n Lk+gD+++F+l +rse  ++v
  HL.SW.v1.0.G023500.1 10 VPLNFAKEHLKN-EGS--VILLIPDRGFWSVKFEIkhKNYSKRrAGFSCGWKVFAKDNYLKVGDVCIFELLKRSENVFKV 86
                          799******655.454..7777777777777774445555555599***********************99987774454 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010196.3E-7187IPR003340B3 DNA binding domain
PROSITE profilePS5086311.998192IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.0E-16988IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.3E-16986IPR015300DNA-binding pseudobarrel domain
CDDcd100175.59E-161088No hitNo description
PfamPF023622.0E-131086IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 98 aa     Download sequence    Send to blast
MLVAMSGPQV PLNFAKEHLK NEGSVILLIP DRGFWSVKFE IKHKNYSKRR AGFSCGWKVF  60
AKDNYLKVGD VCIFELLKRS ENVFKVSIDY AADYASD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1608859
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.13e-08B3 family protein