PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G023573.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family DBB
Protein Properties Length: 191aa    MW: 20906.5 Da    PI: 6.9625
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G023573.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.62.1e-07433534
              zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeH 34
                           C+ +e+  ++ fC  ++  lC+ C ++ H
  HL.SW.v1.0.G023573.1  4 LCDACESAAAIVFCAADEAALCRACDEKVH 33
                          7**************************998 PP
2zf-B_box26.99.9e-095291237
              zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
                          e ++C+ +e+ ++ ++Ce +++ lC +C +  H g    H
  HL.SW.v1.0.G023573.1 52 EVPRCDICENAPAFFYCEIDGSSLCLQCDMIVHVGgkrtH 91
                          789***************************9995544455 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003364.4E-8147IPR000315B-box-type zinc finger
PROSITE profilePS5011910.239147IPR000315B-box-type zinc finger
CDDcd000212.19E-6345No hitNo description
PfamPF006437.8E-6342IPR000315B-box-type zinc finger
SMARTSM003365.6E-115196IPR000315B-box-type zinc finger
PROSITE profilePS501198.9445196IPR000315B-box-type zinc finger
PfamPF006431.6E-65285IPR000315B-box-type zinc finger
CDDcd000211.25E-65484No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0070370Biological Processcellular heat acclimation
GO:0071483Biological Processcellular response to blue light
GO:0005634Cellular Componentnucleus
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MRTLCDACES AAAIVFCAAD EAALCRACDE KVHMCNKLAS RHVRVGLANP SEVPRCDICE  60
NAPAFFYCEI DGSSLCLQCD MIVHVGGKRT HGRYLLLRQR VEFPGDKPGG NVDEPGSQPG  120
SDQGEAAARR GGQNQPSSKM TAEENHQQNH RVSPVRIPEA NADGHTKRDT KMIDLNMKPH  180
KLHEQSSNNQ V
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010113384.21e-107B-box zinc finger protein 18 isoform X1
RefseqXP_024032860.11e-107B-box zinc finger protein 18 isoform X2
SwissprotC0SVM55e-76BBX19_ARATH; B-box zinc finger protein 19
TrEMBLA0A2P5FNY01e-122A0A2P5FNY0_TREOI; B-box-type zinc finger
STRINGXP_010113384.11e-108(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27343370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.12e-78DBB family protein