PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G023713.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family C3H
Protein Properties Length: 140aa    MW: 15649.8 Da    PI: 8.6617
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G023713.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.23.2e-092753127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                          +++++C ff++tG Ck+ ++Ck++H++
  HL.SW.v1.0.G023713.1 27 PGQPECTFFLKTGDCKFKSNCKYHHPK 53
                          5789*********************96 PP
2zf-CCCH36.39.7e-127598326
                          S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                          + +C +++r+G+Ck+G+ Ck+ H+
  HL.SW.v1.0.G023713.1 75 QNICTYYSRYGICKFGPACKYDHP 98
                          679********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.4272654IPR000571Zinc finger, CCCH-type
SMARTSM003564.1E-42653IPR000571Zinc finger, CCCH-type
PfamPF006428.6E-72853IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.94E-63054IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.24E-77098IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.6872100IPR000571Zinc finger, CCCH-type
SMARTSM003563.1E-57299IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-97598IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-47797IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MNNPVTETNM YQHHPPQKLI EEYPERPGQP ECTFFLKTGD CKFKSNCKYH HPKKTAMGAP  60
RCALSDKGLP LRPDQNICTY YSRYGICKFG PACKYDHPVQ ATPTMSGVEN QPPPYSNMAG  120
EGAGIARRSR SETQIQQLV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024025011.11e-65zinc finger CCCH domain-containing protein 43
SwissprotQ9STM47e-42C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBLA0A2P5EI994e-73A0A2P5EI99_TREOI; Zinc finger, CCCH-type
STRINGGorai.001G061800.11e-58(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41563361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.13e-44C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]