PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G024168.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family MYB
Protein Properties Length: 264aa    MW: 29716.2 Da    PI: 8.4894
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G024168.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.94.1e-171461148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          +g+WT+eEd +lv +++q+G  +W++ ++  g+ R++k+c++rw +yl
  HL.SW.v1.0.G024168.1 14 KGPWTPEEDRILVSYIQQFGHANWRALPKQAGLQRCGKSCRLRWTNYL 61
                          79********************************************97 PP
2Myb_DNA-binding55.81e-1767112148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                           rg++++eE++ ++++++ lG++ W++Ia+ ++ gRt++++k++w+++l
  HL.SW.v1.0.G024168.1  67 RGNFSKEEEDTIIKLHHNLGNR-WSSIAAQLP-GRTDNEIKNFWHTHL 112
                           89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.4E-26564IPR009057Homeodomain-like
PROSITE profilePS5129416.672961IPR017930Myb domain
SuperFamilySSF466893.19E-3010108IPR009057Homeodomain-like
SMARTSM007175.7E-131363IPR001005SANT/Myb domain
PfamPF002493.2E-151461IPR001005SANT/Myb domain
CDDcd001674.91E-101661No hitNo description
PROSITE profilePS5129426.95462116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-2765117IPR009057Homeodomain-like
SMARTSM007172.0E-1666114IPR001005SANT/Myb domain
PfamPF002491.4E-1667112IPR001005SANT/Myb domain
CDDcd001673.61E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MARRPCCENM GLKKGPWTPE EDRILVSYIQ QFGHANWRAL PKQAGLQRCG KSCRLRWTNY  60
LRPDIKRGNF SKEEEDTIIK LHHNLGNRWS SIAAQLPGRT DNEIKNFWHT HLKKKLIKQS  120
NSTCSSSTDH HHELLARLHP MMINNARTSS SSTSNATAVL TATATTSANA MVVHTTHHHQ  180
HHYYKYSTTT TSTAFDPKFQ ISSSLNSGNG NNGQMIENNN YIDDDEDDVM NEDMNDFWYK  240
LFVKAGETTT AAAPVPPALA DFG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-27911622128MYB TRANSFORMING PROTEIN
1mse_C2e-27121162105C-Myb DNA-Binding Domain
1msf_C2e-27121162105C-Myb DNA-Binding Domain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004296369.11e-78PREDICTED: myb-related protein Myb4-like
TrEMBLA0A2P5C0L42e-90A0A2P5C0L4_TREOI; MYB transcription factor
STRINGXP_004296369.15e-78(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.13e-69myb domain protein 15