PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G024285.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family B3
Protein Properties Length: 507aa    MW: 57769.8 Da    PI: 7.9068
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G024285.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.11.2e-1622112299
                           EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                    B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                           fk+    d+l+++ l++p  f++++g+    + t++++ + g +We+kl  +++ g+++l+kGW eF k   ++ g +++F++dg+se 
  HL.SW.v1.0.G024285.1  22 FKII-LRDTLEENKLRVPHYFVKKCGET--LTETVSVKLPCGSKWEMKL--ENCNGQFWLQKGWPEFMKHYSIERGHMLTFRYDGNSEL 105
                           5554.368888889***********955..7789***************..********************************997666 PP

                           ..EEEEE-S CS
                    B3  91 elvvkvfrk 99 
                             +  +f+k
  HL.SW.v1.0.G024285.1 106 --YAAIFDK 112
                           ..8888876 PP
2B341.62.2e-13366462198
                           EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE......EEE-TTHHHHHHHHT--TT-EEEEE CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr......yvltkGWkeFvkangLkegDfvvFk 83 
                           ffk+ +++++  +  +++p + a++h ++  e+ t++l  +sg  W+ +++   +++        v+ +GWkeF  +n+Lk  D++vF+
  HL.SW.v1.0.G024285.1 366 FFKIVIQPSNKWH--VCVPSDLADKHIEN--EG-TVILSIPSGSCWSAQFRR--RKNYitgkpvAVICSGWKEFMADNDLKLDDVCVFE 447
                           7788877777766..699*****999545..33.8***************54..44332256666777********************* PP

                           E-SSSEE..EEEEE- CS
                    B3  84 ldgrsefelvvkvfr 98 
                           l++ +e +++v+++r
  HL.SW.v1.0.G024285.1 448 LHNGTEISFHVSIVR 462
                           987688888999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.12E-2216112IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.8E-2216113IPR015300DNA-binding pseudobarrel domain
CDDcd100173.78E-1519111No hitNo description
PROSITE profilePS5086312.61920113IPR003340B3 DNA binding domain
SMARTSM010195.5E-1321113IPR003340B3 DNA binding domain
PfamPF023629.5E-1422112IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.9E-8222281IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.22E-8223280IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.15229323IPR003340B3 DNA binding domain
CDDcd100171.15E-6229279No hitNo description
SuperFamilySSF1019361.02E-16360462IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.9E-17360462IPR015300DNA-binding pseudobarrel domain
CDDcd100172.59E-14365462No hitNo description
SMARTSM010195.4E-10366464IPR003340B3 DNA binding domain
PfamPF023628.8E-11366462IPR003340B3 DNA binding domain
PROSITE profilePS5086310.659381464IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MPSEPPEDSE KPTCFSKNPH FFKIILRDTL EENKLRVPHY FVKKCGETLT ETVSVKLPCG  60
SKWEMKLENC NGQFWLQKGW PEFMKHYSIE RGHMLTFRYD GNSELYAAIF DKTTVEIDYP  120
STSAHSDKYD IDEKLQVPKT EVSDDSIEIL DDISFCHTSG VKSPCSRSPK RMRTSPTGNV  180
DSPFECEQDQ STTPRKTKYG IPRIMKALHT SEKNAALQWT SDFKSEHPFF KVVMQPYYIL  240
GRRLAIPYQF AKIHLNNRFY DVTLKVPNEK KTWPVKYSFG EHKKATPRFE TVVILGVGRS  300
SKGSMSPAHY ESGSPSFDNC SPAKQVNECN SSQSSEPPMV GKQLSPTFDE RVKILENAAL  360
ESEKPFFKIV IQPSNKWHVC VPSDLADKHI ENEGTVILSI PSGSCWSAQF RRRKNYITGK  420
PVAVICSGWK EFMADNDLKL DDVCVFELHN GTEISFHVSI VRVAVSDELK CQGSQVRTRQ  480
GDEMRRIETV MRCENVLKMA CVYTNN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2P5BZ571e-171A0A2P5BZ57_PARAD; B3 DNA binding domain containing protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-28B3 family protein