PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G024362.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family MYB
Protein Properties Length: 244aa    MW: 28323.4 Da    PI: 7.3808
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G024362.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.52.7e-172168148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          +g+WT eEd++l+++++ +G g W++ a+  g++Rt+k+c++rw++yl
  HL.SW.v1.0.G024362.1 21 KGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYL 68
                          79********************************************97 PP
2Myb_DNA-binding52.51.1e-1674117146
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                           rg+ T eE++++ ++++++G++ W++Ia++++ gRt++++k++w++
  HL.SW.v1.0.G024362.1  74 RGNITNEEQLIIMELHAKWGNR-WSKIAKHLP-GRTDNEIKNYWRT 117
                           7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.8E-231571IPR009057Homeodomain-like
PROSITE profilePS5129415.4111668IPR017930Myb domain
SuperFamilySSF466891.06E-2919115IPR009057Homeodomain-like
SMARTSM007177.2E-132070IPR001005SANT/Myb domain
PfamPF002493.4E-162168IPR001005SANT/Myb domain
CDDcd001675.02E-102368No hitNo description
PROSITE profilePS5129424.62469123IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.0E-2472124IPR009057Homeodomain-like
SMARTSM007171.1E-1473121IPR001005SANT/Myb domain
PfamPF002492.4E-1574117IPR001005SANT/Myb domain
CDDcd001671.21E-1178117No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0080086Biological Processstamen filament development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MDDRKTCSSN SSHNQEVEVR KGPWTMEEDL ILINYIANHG EGVWNSLAKA AGLKRTGKSC  60
RLRWLNYLRP DVRRGNITNE EQLIIMELHA KWGNRWSKIA KHLPGRTDNE IKNYWRTRIQ  120
KHMKQADHHN NQNSIIHHHD HQINVNYQQQ SSDHQMMNDQ GSTSSQVSSS TVDAMETYSP  180
PLMSSSSYQG ISYMDHHHHH TNIINNYPMA LPISHHPVVS SNIDQTYNWT MDDFWSMQLL  240
NSE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-251812324128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010108787.11e-102myb-related protein 305
SwissprotP813916e-85MYB05_ANTMA; Myb-related protein 305
TrEMBLA0A2P5BUN11e-129A0A2P5BUN1_PARAD; MYB transcription factor
STRINGXP_010108787.11e-101(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33053469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27810.12e-80myb domain protein 21
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]