PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G025068.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

FAR1

Protein Properties

Length: 222aa MW: 24735 Da PI: 8.7998

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G025068.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	90.4	2.4e-28	110	197	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fYn+YA+++GF +r+sk ++s+r+g+ + r +vC+keg+r ++k++ k r+raetr+gC+a++ v+k ++gkw+vtk+++eH+H+l+ HL.SW.v1.0.G025068.1 110 FYNAYATRIGFIIRVSKLSRSRRDGTAIGRALVCNKEGYRMPDKRE--KIVRQRAETRVGCRAMILVRKVTSGKWVVTKFVKEHTHPLT 196 ****************************************9988..9************************************98 PP FAR1 91 p 91 p HL.SW.v1.0.G025068.1 197 P 197 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.5E-25	110	197	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence Send to blast
MILRVMVYLV DHVSRNKSLG FKMEFGVDGD VNGEVLRNSV EVENSRGGDE NETGGSSVEG 60 AFQHDQDEKM NQDSPDGDMI PVGVPTTSLV PADEPFVGQE FDSEAAAHAF YNAYATRIGF 120 IIRVSKLSRS RRDGTAIGRA LVCNKEGYRM PDKREKIVRQ RAETRVGCRA MILVRKVTSG 180 KWVVTKFVKE HTHPLTPGKG RRDCIYDQYP NRRAEASMKT H*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010097543.2	1e-126	protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A2P5CSI9	1e-132	A0A2P5CSI9_PARAD; FHY3/FAR1 family
STRING	XP_010097543.1	1e-124	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2453	30	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	4e-67	FAR1 family protein