PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G025215.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family RAV
Protein Properties Length: 392aa    MW: 42903.4 Da    PI: 9.2646
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G025215.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.29.7e-1472120155
                   AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           s+ykGV   + +grW A+I++      ++r++lg+f  ++eAa+a++ a+++++g
  HL.SW.v1.0.G025215.1  72 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAARAYDVAAQRFRG 120
                           89****9888.8*********3.....5**********99*************98 PP
2B3102.22.8e-32212303187
                           EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                           f+k+ tpsdv+k++rlv+pk++ae+h    ++++ ++  l +ed  g++W+++++y+++s++yvltkGW++Fvk++gLk+gD+v+F+++
  HL.SW.v1.0.G025215.1 212 FEKAVTPSDVGKLNRLVIPKQHAEKHfplqSSNTSKGLLLNFEDGGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGLKAGDIVTFQRS 300
                           89***************************988888999*************************************************65 PP

                           .SS CS
                    B3  86 .gr 87 
                             +
  HL.SW.v1.0.G025215.1 301 tCN 303
                           444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.71E-2672127No hitNo description
PfamPF008473.1E-972120IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-1772128IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.1E-2173128IPR001471AP2/ERF domain
PROSITE profilePS5103220.45573128IPR001471AP2/ERF domain
SMARTSM003803.5E-3073134IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.102.5E-41206319IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.94E-30211301IPR015300DNA-binding pseudobarrel domain
CDDcd100171.40E-29211304No hitNo description
PfamPF023621.7E-29212300IPR003340B3 DNA binding domain
PROSITE profilePS5086314.466212317IPR003340B3 DNA binding domain
SMARTSM010192.3E-24212317IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009910Biological Processnegative regulation of flower development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0048527Biological Processlateral root development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MDGITSSCST TDESTTSTTE SASLSAANAA AVPPSVPPPP ERLCRVGSGA SVVLDTGSES  60
GVEAESRKLP SSKYKGVVPQ PNGRWGAQIY EKHQRVWLGT FNEEDEAARA YDVAAQRFRG  120
RDAVTNFKPL SSETDEIEAS FLSSHSKPEI VDMLRKHTYN DELEQSKRNY GATGSHNNRM  180
MMMKHLLMKS SGFGSGSDDP LLMKQHVREQ LFEKAVTPSD VGKLNRLVIP KQHAEKHFPL  240
QSSNTSKGLL LNFEDGGGKV WRFRYSYWNS SQSYVLTKGW SRFVKEKGLK AGDIVTFQRS  300
TCNGPDKQLY IDWKARDNGP TAGPGPVQQP QLQQSPPVQM VRLFGVNIFK IPGSGVVVEA  360
GIGGGCNGKR IRDLELLELE CAKKPRIIGA L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-5720932611127DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to bipartite recognition sequences composed of two unrelated motifs, 5'-CAACA-3' and 5'-CACCTG-3'. May function as negative regulator of plant growth and development. {ECO:0000269|PubMed:15040885, ECO:0000269|PubMed:9862967}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00139DAPTransfer from AT1G13260Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by brassinosteroid and zeatin. {ECO:0000269|PubMed:15040885}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015895704.10.0AP2/ERF and B3 domain-containing transcription factor RAV1-like isoform X1
RefseqXP_015895705.10.0AP2/ERF and B3 domain-containing transcription factor RAV1-like isoform X2
SwissprotQ9ZWM91e-144RAV1_ARATH; AP2/ERF and B3 domain-containing transcription factor RAV1
TrEMBLA0A2P5ENH50.0A0A2P5ENH5_TREOI; AP2/ERF transcription factor
STRINGXP_010093403.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29203274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.11e-139related to ABI3/VP1 1
Publications ? help Back to Top
  1. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  2. Mittal A,Jiang Y,Ritchie GL,Burke JJ,Rock CD
    AtRAV1 and AtRAV2 overexpression in cotton increases fiber length differentially under drought stress and delays flowering.
    Plant Sci., 2015. 241: p. 78-95
    [PMID:26706061]
  3. Huang Y,Feng CZ,Ye Q,Wu WH,Chen YF
    Arabidopsis WRKY6 Transcription Factor Acts as a Positive Regulator of Abscisic Acid Signaling during Seed Germination and Early Seedling Development.
    PLoS Genet., 2016. 12(2): p. e1005833
    [PMID:26829043]
  4. Zhao Y, et al.
    ABA receptor PYL9 promotes drought resistance and leaf senescence.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(7): p. 1949-54
    [PMID:26831097]