PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G025235.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

C3H

Protein Properties

Length: 386aa MW: 43546.1 Da PI: 8.5195

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G025235.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.4	1.9e-06	338	360	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C f+ + C+ G++C++ H+ HL.SW.v1.0.G025235.1 338 KPCTFYKTSKGCRNGANCPYQHD 360 58********************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	13.911	334	362	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	8.63E-5	335	362	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	6.6E-4	338	360	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence Send to blast
MNMKRARTFD RMKKKRPRTL KRVSWAPDTD LCQVKLFTSD DCPAKTIMKS QEEVRGKSPP 60 IEPTYVSQTQ WKFPLMFVLS PSWGVVSGEE SQEAKHQKWR ETRVLEAVYP RLSSIPSSSS 120 VCSEVENECY DDGQTPLIPL TPIEEEEEES PSLVTPLNPT TSSQFPSDQP SSTKPSTDAY 180 ASLIDTNLLF KILSDPQMIE KFKNNGVTLP ASTTRSAPVP ETKQGYVDVN SVSPQQDSSS 240 TISEHVVGLP RFSSKHLFTS SNQVKSTTNI AAACNQPNPM PPMKDLNYYK NLIRQHGCEK 300 VEHKEPRYAQ NGESYSYLED PKLVKNYKPR DLTLKNLKPC TFYKTSKGCR NGANCPYQHD 360 VPTQWRVNKD LETHNSKPTR LNTNC*

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence Send to blast

MNMKRARTFD RMKKKRPRTL KRVSWAPDTD LCQVKLFTSD DCPAKTIMKS QEEVRGKSPP  60
IEPTYVSQTQ WKFPLMFVLS PSWGVVSGEE SQEAKHQKWR ETRVLEAVYP RLSSIPSSSS  120
VCSEVENECY DDGQTPLIPL TPIEEEEEES PSLVTPLNPT TSSQFPSDQP SSTKPSTDAY  180
ASLIDTNLLF KILSDPQMIE KFKNNGVTLP ASTTRSAPVP ETKQGYVDVN SVSPQQDSSS  240
TISEHVVGLP RFSSKHLFTS SNQVKSTTNI AAACNQPNPM PPMKDLNYYK NLIRQHGCEK  300
VEHKEPRYAQ NGESYSYLED PKLVKNYKPR DLTLKNLKPC TFYKTSKGCR NGANCPYQHD  360
VPTQWRVNKD LETHNSKPTR LNTNC*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010113371.1	5e-89	zinc finger CCCH domain-containing protein 30
TrEMBL	A0A2P5FNU2	1e-103	A0A2P5FNU2_TREOI; Zinc finger, CCCH-type
STRING	XP_010113371.1	2e-88	(Morus notabilis)