PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G025557.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family ERF
Protein Properties Length: 321aa    MW: 34938.5 Da    PI: 8.0025
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G025557.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.64.1e-203686256
                   AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                          ++ GVr+++ +grWvAeI+d s   +r r +lg+++t+eeAa+a+++a+++l+ge
  HL.SW.v1.0.G025557.1 36 RFVGVRQRP-SGRWVAEIKDSS---QRVRLWLGTYDTPEEAARAYDEAARALRGE 86
                          589******.7*********43...36**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.5343693IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-283693IPR001471AP2/ERF domain
SMARTSM003804.0E-363699IPR001471AP2/ERF domain
CDDcd000183.56E-313693No hitNo description
PfamPF008474.1E-153686IPR001471AP2/ERF domain
PRINTSPR003673.3E-73748IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-203793IPR016177DNA-binding domain
PRINTSPR003673.3E-75975IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MAGSEATKTT SATITTTTPT TTTTNTAQSR RPAVRRFVGV RQRPSGRWVA EIKDSSQRVR  60
LWLGTYDTPE EAARAYDEAA RALRGENART NFAPPPADAN NSVPCSLIPS PSGAGSAGGP  120
EGRLGLSFSS IKAKLSKNLQ SIMARTSENN SNKSKSRVSD HFTFASIFHF RNKYYPDHHH  180
QYQNSMMMMR NMNIDQTVVQ PSIVVPHVVQ DQTTSCSSSS WETSSVSDCS PEWVGFRQAG  240
GFDSDGSDIG EGFLDHQMNG NNLGYWMDSP EMSVCNSNSS SKRFKVSSSV VVPPTFSATT  300
NTSPFLYDGD HEIMNSNYGV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-1436921471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015900171.11e-115dehydration-responsive element-binding protein 2B-like
TrEMBLA0A2P5EI351e-140A0A2P5EI35_TREOI; AP2/ERF transcription factor
STRINGXP_008391659.11e-103(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83243143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.12e-16related to AP2 11