PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G025717.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family ERF
Protein Properties Length: 206aa    MW: 22635.2 Da    PI: 8.4538
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G025717.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.41.5e-17115166256
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                           +++GVr+++ +g+++AeIrdp +ng   r++lg++  ae+Aa a+++a+ k++g+
  HL.SW.v1.0.G025717.1 115 HFRGVRRRP-WGKYAAEIRDPAKNG--SRVWLGTYERAEDAALAYDRAAFKIRGA 166
                           58*******.***********9987..*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003806.3E-36115179IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-31115174IPR001471AP2/ERF domain
PROSITE profilePS5103223.235115173IPR001471AP2/ERF domain
CDDcd000188.28E-29115175No hitNo description
PfamPF008471.7E-11115165IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-22115174IPR016177DNA-binding domain
PRINTSPR003675.2E-13116127IPR001471AP2/ERF domain
PRINTSPR003675.2E-13155175IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MPGSKSSLNF NELALLESIY HHLLDDSASP APAISNSFGS ASRTSSNISS SDNGLAFTAN  60
DSELPFKHSE RCSDQDMLTY GGSNSSITDP YVISCPGDSD AAMASEKQAP RRAMHFRGVR  120
RRPWGKYAAE IRDPAKNGSR VWLGTYERAE DAALAYDRAA FKIRGAKAKL NFPHLIGCSY  180
EVEPVRVTTK RRRFPELDYV NEPPR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-30112173263ATERF1
3gcc_A3e-30112173263ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:11950980}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly induced by wounding. Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1, but seems to not be affected by ethylene. Induction by salicylic acid (SA) is controlled by growth and/or developmental conditions, and seems to be more efficient and independent of PAD4 in older plants. {ECO:0000269|PubMed:11950980, ECO:0000269|PubMed:12068110}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021828370.16e-51ethylene-responsive transcription factor 1-like
SwissprotQ8L9K17e-41ERF99_ARATH; Ethylene-responsive transcription factor 13
TrEMBLA0A2P5AYD02e-63A0A2P5AYD0_TREOI; AP2/ERF transcription factor
STRINGXP_004308507.12e-49(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51233157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.18e-32ethylene-responsive element binding factor 13
Publications ? help Back to Top
  1. Maimbo M,Ohnishi K,Hikichi Y,Yoshioka H,Kiba A
    Induction of a small heat shock protein and its functional roles in Nicotiana plants in the defense response against Ralstonia solanacearum.
    Plant Physiol., 2007. 145(4): p. 1588-99
    [PMID:17965181]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]