PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G025884.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family MYB
Protein Properties Length: 244aa    MW: 28276.7 Da    PI: 9.3916
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G025884.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.77.1e-151460248
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          + W +eEd++l+++v+ +G g+W t+++  g+ R +k+c++rw +yl
  HL.SW.v1.0.G025884.1 14 NLWKPEEDLILKNYVETHGEGNWQTVSQQTGLMRGGKSCRLRWKNYL 60
                          56*******************************************97 PP
2Myb_DNA-binding49.41.1e-1566113148
                           TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 
                           rg +++eE++l+++ +k+lG++  W++Ia +++ gRt++++k++w+++l
  HL.SW.v1.0.G025884.1  66 RGGMSQEEEDLIIRMHKLLGNRsEWSLIAGRLP-GRTDNEVKNYWNTHL 113
                           6779*****************************.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.407860IPR017930Myb domain
SMARTSM007172.2E-111262IPR001005SANT/Myb domain
SuperFamilySSF466893.21E-2612109IPR009057Homeodomain-like
PfamPF002492.0E-131460IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-211567IPR009057Homeodomain-like
CDDcd001671.25E-91660No hitNo description
PROSITE profilePS5129423.0361117IPR017930Myb domain
SMARTSM007173.2E-1365115IPR001005SANT/Myb domain
PfamPF002495.0E-1466113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-2168116IPR009057Homeodomain-like
CDDcd001673.13E-1169113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MENNTVKKQL PKKNLWKPEE DLILKNYVET HGEGNWQTVS QQTGLMRGGK SCRLRWKNYL  60
RPNIKRGGMS QEEEDLIIRM HKLLGNRSEW SLIAGRLPGR TDNEVKNYWN THLNKSTSPM  120
RKRKRVNNTN DPQNDTKSTE TTNKKSKIQD PHNPMISNDT QKISTEETEM EEKKKEEKNG  180
LMDDAKSFNY KIEYPIMATN SSTFVFDDEP FIGYTNSFVY FEAFGYTAGV ENHAEIGRQS  240
IFP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-19131177108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activation factor positively regulating trichomes development (PubMed:24803498). Has a function nearly equivalent to that of GL1 and can complement gl1 mutants (PubMed:24803498). {ECO:0000269|PubMed:24803498}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin (IAA). {ECO:0000269|PubMed:9839469}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010112475.11e-100transcription factor MYB82
SwissprotQ9LTF75e-64MYB82_ARATH; Transcription factor MYB82
TrEMBLA0A2P5FPY31e-118A0A2P5FPY3_TREOI; MYB transcription factor
STRINGXP_010112475.11e-100(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF135452026
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52600.15e-61myb domain protein 82