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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | HL.SW.v1.0.G026006.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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| Family | Dof | ||||||||
| Protein Properties | Length: 337aa MW: 36685.9 Da PI: 7.0764 | ||||||||
| Description | Dof family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | zf-Dof | 124.1 | 4.5e-39 | 38 | 98 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
+++alkcprCds ntkfCyynny+lsqPr+fCk+CrryWtkGG lrnvPvGgg+rk k+s+
HL.SW.v1.0.G026006.1 38 QQQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKTKRSK 98
6899*****************************************************9986 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| ProDom | PD007478 | 3.0E-26 | 29 | 91 | IPR003851 | Zinc finger, Dof-type |
| Pfam | PF02701 | 3.4E-33 | 40 | 96 | IPR003851 | Zinc finger, Dof-type |
| PROSITE profile | PS50884 | 29.674 | 42 | 96 | IPR003851 | Zinc finger, Dof-type |
| PROSITE pattern | PS01361 | 0 | 44 | 80 | IPR003851 | Zinc finger, Dof-type |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 337 aa Download sequence Send to blast |
MQDVHSIGDG GRFFAGSGGG GAAGDRRLRP HHNHNQTQQQ ALKCPRCDSL NTKFCYYNNY 60 NLSQPRHFCK NCRRYWTKGG VLRNVPVGGG CRKTKRSKQK SSSASATTVP EPRQPSQDRK 120 SNSHSSSESS SLTATNTNAA TEAVSAPSTS FGSNLLNVNQ ESKFFVSQST NPSFEAPALI 180 EQSGSDWGIF SDIGSFTNLI TSSSNGGGAM AAFEYNSISD ISISPFRLNQ QGQDHHHQAP 240 QSQTWHQQNT KTMNVLTDQD QVKVQEITGG LLDETSQADL CVLQDRSNGG VFGSLGDWQS 300 CGDQGLFDLP NSVDQTYWSQ SQSQWTDQDH TSLYLP* |
| Binding Motif ? help Back to Top | |||
|---|---|---|---|
| Motif ID | Method | Source | Motif file |
| MP00570 | DAP | Transfer from AT5G60850 | Download |
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| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | Retrieve | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_010101639.1 | 1e-136 | dof zinc finger protein DOF5.4 | ||||
| TrEMBL | A0A2P5BC99 | 1e-137 | A0A2P5BC99_PARAD; Zinc finger, Dof-type | ||||
| STRING | XP_010101639.1 | 1e-136 | (Morus notabilis) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF5998 | 30 | 50 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G60850.1 | 8e-35 | OBF binding protein 4 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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