PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G026083.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family NAC
Protein Properties Length: 171aa    MW: 19682.4 Da    PI: 9.8138
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G026083.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM163.76.6e-51221501128
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                           lppGfrFhP+deel+v+yL++kv++++l++  v++e+d+yk++PwdLp k+v +++ ew+fF++rd+ky++g+r+nra+ sgyWkatg+
  HL.SW.v1.0.G026083.1  22 LPPGFRFHPSDEELIVHYLQNKVNSRPLPA-LVMAELDLYKYNPWDLPtKAVFGDDGEWFFFTPRDRKYPNGNRPNRAAGSGYWKATGT 109
                           79***************************9.78***************556666777******************************** PP

                   NAM  89 dkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                           dk++l+  +++ +g+kk Lvfy+gr pkg kt+W+m+eyrl
  HL.SW.v1.0.G026083.1 110 DKHILTCcGTKSIGVKKALVFYQGRPPKGLKTEWIMNEYRL 150
                           ****99878889***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-5714155IPR003441NAC domain
PROSITE profilePS5100553.89522170IPR003441NAC domain
PfamPF023655.4E-2723150IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MDNHDEKKNY NNIETQNAAF QLPPGFRFHP SDEELIVHYL QNKVNSRPLP ALVMAELDLY  60
KYNPWDLPTK AVFGDDGEWF FFTPRDRKYP NGNRPNRAAG SGYWKATGTD KHILTCCGTK  120
SIGVKKALVF YQGRPPKGLK TEWIMNEYRL LDSMVWSAST TFKRKSSMRI *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A9e-581715010140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305|PubMed:21107887}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010107555.22e-85NAC domain-containing protein 18
SwissprotQ8GY421e-67NAC25_ARATH; NAC transcription factor 25
TrEMBLA0A2P5D7J02e-92A0A2P5D7J0_PARAD; NAC domain containing protein
TrEMBLA0A2P5FV132e-92A0A2P5FV13_TREOI; NAC domain containing protein
STRINGXP_010107555.12e-85(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24162981
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.15e-70NAC domain containing protein 25