PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G026202.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

FAR1

Protein Properties

Length: 487aa MW: 56269.2 Da PI: 8.9825

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G026202.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	43.4	1.2e-13	43	115	18	88
FAR1 18 kskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHe 88 k+ + k+ng+it+r++vCskeg+r++ + + + ++r+++ trtgC+a+++v ++ +g w ++++ HnH+ HL.SW.v1.0.G026202.1 43 KQMYGKKNGNITMRKWVCSKEGFRKHMEIDkAGGSKRKTSITRTGCQASFRVVMMGdEGPWICKEFQPLHNHD 115 3344479999************9987663677889999********999989************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.7E-12	41	115	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.3E-29	239	333	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 487 aa Download sequence Send to blast
MEEVGSLQET SNWENILQSL GIEKLANDIE TEDVQGKASV SAKQMYGKKN GNITMRKWVC 60 SKEGFRKHME IDKAGGSKRK TSITRTGCQA SFRVVMMGDE GPWICKEFQP LHNHDKAALD 120 ELRFLRSNRS VSETLVAQVR SMNQVGIRTS HIISHLAMQS GGYERMPCQL RDVYNKVAHV 180 KRKEKRCTDS DGALGYLDCL SKRDPNFFIQ YQCDVDNRLG NLFWADGYSR RDFVAFGEVI 240 GFDTTYMTNK YNKPLTIILG VNHHFKTCIF GMALLNSEDE QTYFWLLDKF IECHNHVTPK 300 VVVTDGDGAI KNAVLKYFPN ATHRLCAWHL CTNALKISKD PRFLQGFQDV MYNYYTIEEF 360 MQKWGELIHN FDLHSSQWCT NTYHSRRSWA ETYLRGKFVA GMRTNQRCES MNSSIKKFLH 420 ASYSLCEFVT SIDVAMTKLR HIEREEDYNS RHSSPPLPGP KNAPKTYRKQ CAKFYTRDMY 480 YKVLIK*

Sequence ? help Back to Top

Protein Sequence Length: 487 aa Download sequence Send to blast

MEEVGSLQET SNWENILQSL GIEKLANDIE TEDVQGKASV SAKQMYGKKN GNITMRKWVC  60
SKEGFRKHME IDKAGGSKRK TSITRTGCQA SFRVVMMGDE GPWICKEFQP LHNHDKAALD  120
ELRFLRSNRS VSETLVAQVR SMNQVGIRTS HIISHLAMQS GGYERMPCQL RDVYNKVAHV  180
KRKEKRCTDS DGALGYLDCL SKRDPNFFIQ YQCDVDNRLG NLFWADGYSR RDFVAFGEVI  240
GFDTTYMTNK YNKPLTIILG VNHHFKTCIF GMALLNSEDE QTYFWLLDKF IECHNHVTPK  300
VVVTDGDGAI KNAVLKYFPN ATHRLCAWHL CTNALKISKD PRFLQGFQDV MYNYYTIEEF  360
MQKWGELIHN FDLHSSQWCT NTYHSRRSWA ETYLRGKFVA GMRTNQRCES MNSSIKKFLH  420
ASYSLCEFVT SIDVAMTKLR HIEREEDYNS RHSSPPLPGP KNAPKTYRKQ CAKFYTRDMY  480
YKVLIK*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF15947	4	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-74	FAR1-related sequence 5