PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G026561.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family MYB
Protein Properties Length: 470aa    MW: 51351 Da    PI: 7.2067
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G026561.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.21.6e-173481148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          +g+WT+ Ed  l ++vk++G g+W+++ ++ g++R++k+c++rw ++l
  HL.SW.v1.0.G026561.1 34 KGPWTAAEDHVLMEYVKKHGEGNWNSVQKYSGLNRCGKSCRLRWANHL 81
                          79******************************************9986 PP
2Myb_DNA-binding51.81.8e-1687130146
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                           +g++T+eE+ l++++++++G++ W++ a+ ++ gRt++++k++w++
  HL.SW.v1.0.G026561.1  87 KGSFTPEEERLILELHAKYGNK-WARMAAQLP-GRTDNEIKNYWNT 130
                           799*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.0592981IPR017930Myb domain
SMARTSM007172.2E-133383IPR001005SANT/Myb domain
SuperFamilySSF466892.28E-3133128IPR009057Homeodomain-like
PfamPF002496.6E-163481IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-243588IPR009057Homeodomain-like
CDDcd001673.40E-103681No hitNo description
PROSITE profilePS5129426.4982136IPR017930Myb domain
SMARTSM007172.8E-1786134IPR001005SANT/Myb domain
PfamPF002498.9E-1687130IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.1E-2689135IPR009057Homeodomain-like
CDDcd001676.36E-1389130No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0009789Biological Processpositive regulation of abscisic acid-activated signaling pathway
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0090406Cellular Componentpollen tube
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MTPHNNGGAQ SEGGSSGSSG GRCVSGPDGA ILKKGPWTAA EDHVLMEYVK KHGEGNWNSV  60
QKYSGLNRCG KSCRLRWANH LRPNLKKGSF TPEEERLILE LHAKYGNKWA RMAAQLPGRT  120
DNEIKNYWNT RVKRRKRQGL PLYPNDIQHL SPTSSLTPII QSPTTPTTPS FSFQSQNHVP  180
FSPTPPPHSP MSSPIQPFPN LTSPSSFEHN NSSFAFSSPS SFTFHRPVPV LGAPVRFKSF  240
RDSTGSGFSL PTQQSPSPPL GQYTPNQSTG SACFQFPLTF DPTLPQNIAT HFDSEHMGSS  300
GSIRSVKSEL PSSQFTQIHP EITCDNNNNS TNTNINNCNT KVISSATTQR NGGLLEDLLE  360
NLLEEAQRSV VSSAETVPKE ESKDQVDCLP DELSKLLNFV PGNLQAPEWY SDSSEISNGE  420
SLGVTDHNLC LDMQHLASLF PIASAADYGQ NPASWDNLPG ICKGWFKNN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-32321355107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00287DAPTransfer from AT2G32460Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010096901.11e-145transcription factor MYB97
TrEMBLA0A2P5BRQ50.0A0A2P5BRQ5_PARAD; MYB transcription factor
STRINGXP_010096901.11e-145(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.12e-68myb domain protein 101