PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G026564.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

Trihelix

Protein Properties

Length: 431aa MW: 48372.9 Da PI: 6.5328

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G026564.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	83.5	2.8e-26	102	184	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e++ Li +rre++ ++++k++k+lWe++s+kmre+gf rsp++C++kw+nl k++kk +++ k + +s +++y+++le HL.SW.v1.0.G026564.1 102 WVQEETRSLIGFRREVDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKARHQVKVG--SRSAKMSYYEDLE 184 ******************************************************************98..45568****98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.6E-4	92	162	IPR009057	Homeodomain-like
PROSITE profile	PS50090	8.339	94	158	IPR017877	Myb-like domain
SMART	SM00717	0.0081	98	160	IPR001005	SANT/Myb domain
CDD	cd12203	4.01E-27	100	165	No hit	No description
Pfam	PF13837	2.2E-19	101	186	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0042802	Molecular Function	identical protein binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 431 aa Download sequence Send to blast
MYLSSEKTRS VDFYKEGGGG GGGGGVGVGV GGGGGGGEEE ESDRDMMMEV VTNGVLPSHP 60 RNQTQNQLQL QQQQQQQMIL GENSSGGEEH EVKAPKKRAE TWVQEETRSL IGFRREVDGL 120 FNTSKSNKHL WEQISAKMRE KGFDRSPTMC TDKWRNLLKE FKKARHQVKV GSRSAKMSYY 180 EDLEELLRDR NKNSSSTTTV STAAYKSHTP PPKVDSFIHF SDKGEKNSRY FRNEFDIRRI 240 SATDRSAVNL ERRLDHEGDP LAITAADAVV ASGVPPWNWR EAPGNGAENP PSFCGRIITV 300 KLGEYSRRIG IDGSAEAIKE AIKSAFRIRT KRAFWLEDED QVVRSLDRDM PLGNYTLHLD 360 EGITIKFYDE SNRGVVRDEA ISFYTEDDFR DFLTRRGLTG LRELSGYRCI DCLDDLQSGG 420 MYQGVRLLVD *

Sequence ? help Back to Top

Protein Sequence Length: 431 aa Download sequence Send to blast

MYLSSEKTRS VDFYKEGGGG GGGGGVGVGV GGGGGGGEEE ESDRDMMMEV VTNGVLPSHP  60
RNQTQNQLQL QQQQQQQMIL GENSSGGEEH EVKAPKKRAE TWVQEETRSL IGFRREVDGL  120
FNTSKSNKHL WEQISAKMRE KGFDRSPTMC TDKWRNLLKE FKKARHQVKV GSRSAKMSYY  180
EDLEELLRDR NKNSSSTTTV STAAYKSHTP PPKVDSFIHF SDKGEKNSRY FRNEFDIRRI  240
SATDRSAVNL ERRLDHEGDP LAITAADAVV ASGVPPWNWR EAPGNGAENP PSFCGRIITV  300
KLGEYSRRIG IDGSAEAIKE AIKSAFRIRT KRAFWLEDED QVVRSLDRDM PLGNYTLHLD  360
EGITIKFYDE SNRGVVRDEA ISFYTEDDFR DFLTRRGLTG LRELSGYRCI DCLDDLQSGG  420
MYQGVRLLVD *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2jmw_A	5e-44	96	182	1	86	DNA binding protein GT-1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269\|PubMed:10437822, ECO:0000269\|PubMed:15044016, ECO:0000269\|PubMed:7866025}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00004	PBM	Transfer from 920224	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010111631.1	0.0	trihelix transcription factor GT-4
Swissprot	Q9FX53	1e-152	TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBL	A0A2P5FBY0	0.0	A0A2P5FBY0_TREOI; C2H2-zinc finger protein family
STRING	XP_010111631.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6817	32	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.1	1e-144	Trihelix family protein

Publications ? help Back to Top
Le Gourrierec J,Li YF,Zhou DX Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex. Plant J., 1999. 18(6): p. 663-8 [PMID:10417717]