PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G026945.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family ERF
Protein Properties Length: 459aa    MW: 51070.4 Da    PI: 6.0713
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G026945.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.15.2e-19216266256
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                            y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++ + kl+ge
  HL.SW.v1.0.G026945.1 216 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAALAYDREAFKLRGE 266
                           59******9.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.96E-33215275No hitNo description
SMARTSM003802.7E-40216279IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.8E-32216274IPR001471AP2/ERF domain
PROSITE profilePS5103222.932216273IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-22216274IPR016177DNA-binding domain
PfamPF008472.5E-12217266IPR001471AP2/ERF domain
PRINTSPR003679.7E-11217228IPR001471AP2/ERF domain
PRINTSPR003679.7E-11239255IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:2000070Biological Processregulation of response to water deprivation
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MAAAKNSGKS KKGVDETQME IDKRMDLRFS LERRQWKPVL DEASLSPRPF KKIRSPERQH  60
PSTQQQSSSF SYALDSAPPI SPGPPNPSPT SSSSSSSASR IVFPFAYDGS ESQTHFNKQF  120
TGNNYPLFPP VSLPQIPQNQ MISFGSHQQN AMNYHPALFA GAGDVQNQQQ LLQYWSDALN  180
LSPRGRMIMM MNGLGPDGRP IFRPPAPVQP INTTKLYRGV RQRHWGKWVA EIRLPRNRTR  240
LWLGTFDTAE DAALAYDREA FKLRGENARL NFPELFLNKD KSDSSAGPSS ASSCPNKPHE  300
SSKKTIHRNQ PEAQEEQNIE ASDLERMPPP ARDDNPDEDS GLGSTANDEV QGTSAGEGGV  360
VSQSQELVWG DMAEAWLNAI PAGWGPGSPV WDDLDANNNL LLQSHDLQFA NPNQHELNQQ  420
APQDIQNQRY YCEKFGSSTT SSSSYPIKPF FWKDQEDP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-20215273160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017972100.11e-160PREDICTED: ethylene-responsive transcription factor ERF053
TrEMBLA0A2P5B4D60.0A0A2P5B4D6_PARAD; AP2/ERF transcription factor
STRINGEOX993821e-160(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42683258
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.14e-54ERF family protein