PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G027147.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family ERF
Protein Properties Length: 401aa    MW: 44233.2 Da    PI: 6.448
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G027147.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.71.3e-1754102355
                   AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           + GVr+++ +gr++AeIrdp++   + r++lg+f+ta+eAa a+++a+++++g
  HL.SW.v1.0.G027147.1  54 FLGVRRRP-WGRYAAEIRDPTT---KERHWLGTFDTAQEAALAYDRAALSMKG 102
                           56******.**********965...5************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.58753110IPR001471AP2/ERF domain
SMARTSM003801.4E-3153116IPR001471AP2/ERF domain
CDDcd000184.76E-2853109No hitNo description
Gene3DG3DSA:3.30.730.101.1E-2754109IPR001471AP2/ERF domain
SuperFamilySSF541715.69E-2054111IPR016177DNA-binding domain
PRINTSPR003671.6E-75465IPR001471AP2/ERF domain
PfamPF008475.0E-1156102IPR001471AP2/ERF domain
PRINTSPR003671.6E-77692IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010102Biological Processlateral root morphogenesis
GO:0010432Biological Processbract development
GO:0010451Biological Processfloral meristem growth
GO:0010582Biological Processfloral meristem determinacy
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MSTTTTTSKT LDKPFKGYEN GQTQMGFAIL QRNTSPTQPG ERRGRRKQAE PGRFLGVRRR  60
PWGRYAAEIR DPTTKERHWL GTFDTAQEAA LAYDRAALSM KGTQARTNFV YTTTTDLHNT  120
SFHSLHHLTS STNTPFDSNN NNNNNNNNNN SNVQTTTLLP TSQFICSTTS KQPTNQNSPP  180
QLVMTCHNSA TTHHQTFLNQ SNTISDTFDE TSYMSSPPNH RHHHRGDRDC DDNNFFFSND  240
SDNSGYLGCI VPDNCLRPPP TPSPSDHNPK RSSGYSTTAA QTKSHWDMSS SEVEIPVLPA  300
ASSSLGSNPG ELIMPCLDDF NLGFWDNNNL QQQQQPWELN SGDLSAMISS SNFPLTTEGA  360
FYPLTDNSMY GFMSGPTSSV SCSPSLPPLG DVVDLGHSLF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-2141109271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00520DAPTransfer from AT5G18560Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010098339.11e-119ethylene-responsive transcription factor ERF086
TrEMBLA0A2P5ERV11e-163A0A2P5ERV1_TREOI; AP2/ERF transcription factor
STRINGXP_010098339.11e-119(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57843351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18560.12e-51ERF family protein