PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G027148.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family C3H
Protein Properties Length: 487aa    MW: 51181 Da    PI: 8.0524
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G027148.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH40.25.5e-135075227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                          ++ +C f++rtG+C yG+rC+F+H++
  HL.SW.v1.0.G027148.1 50 DEDNCIFYMRTGYCGYGARCRFNHPR 75
                          6789********************96 PP
2zf-CCCH375.7e-1297121327
                           S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                           ++ C++++r+GtCk+G++Ck++H++
  HL.SW.v1.0.G027148.1  97 QPVCQYYMRNGTCKFGASCKYHHPR 121
                           689********************96 PP
3zf-CCCH33.19.4e-11142166226
                           -S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                           ++++C+++ +tG+Ck+G +CkF+H+
  HL.SW.v1.0.G027148.1 142 GEKECSYYVKTGQCKFGVSCKFHHP 166
                           7899********************8 PP
4zf-CCCH38.71.6e-12308334127
                           --S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                           ++++ C++++rtG Ck+G++C+++H+p
  HL.SW.v1.0.G027148.1 308 PGQPDCQYYMRTGDCKFGSSCRYHHPP 334
                           5789*********************97 PP
5zf-CCCH34.82.7e-11356379326
                           S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                            +lC ++a+ G Ck+G+ CkF H+
  HL.SW.v1.0.G027148.1 356 APLCTHYAQRGACKFGPACKFDHP 379
                           68*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.3284876IPR000571Zinc finger, CCCH-type
SMARTSM003563.7E-44875IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.85E-75077IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-105075IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.7E-65475IPR000571Zinc finger, CCCH-type
SMARTSM003563.0E-694121IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.5494122IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.24E-697121IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-997121IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-499120IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-5140167IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.493140168IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-8142166IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.03E-5143167IPR000571Zinc finger, CCCH-type
SMARTSM003566.2E-7307334IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.38307335IPR000571Zinc finger, CCCH-type
PfamPF006428.9E-10309334IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.19E-5312335IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-4313333IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.225353381IPR000571Zinc finger, CCCH-type
SMARTSM003562.9E-7353380IPR000571Zinc finger, CCCH-type
PfamPF006429.4E-9356379IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.19E-5356383IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.4E-5358378IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MERYGRNTTE GGSQSDPSPE WAGTGPETGL EESVWQLGMG VEESYPERPD EDNCIFYMRT  60
GYCGYGARCR FNHPRDRAAA IGAARAGGGE FPERHGQPVC QYYMRNGTCK FGASCKYHHP  120
RYGAGSSGPL SLNYDGYPLR PGEKECSYYV KTGQCKFGVS CKFHHPHPAG MPLPVQSPAT  180
QVPPAPTPVH GPTLYPPMAS PSGSSSQQYG VVVARPSMVQ GSYVQGPYGP MLISPGMVPF  240
PGWGGSYMTS ISPVPSHSNQ PPAGSAQVYG LTQVSHQAPP YTGTYQPVAS PAVPSVSSQK  300
ELSYPERPGQ PDCQYYMRTG DCKFGSSCRY HHPPDIISPK TTVVLSSAGL PMRPGAPLCT  360
HYAQRGACKF GPACKFDHPL GTLSYSPSAS SLSDMPVAPY PVGSSVGTLA PSSSSSDLRP  420
ELALGSTKDS TSARMSSSMS SSSGSVGSTF SKGGPVSHVS LQHPAQITGT STGGNTSTSS  480
EPPTSS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021679538.10.0zinc finger CCCH domain-containing protein 34-like
SwissprotQ6NPN31e-152C3H58_ARATH; Zinc finger CCCH domain-containing protein 58
TrEMBLA0A2P5E4400.0A0A2P5E440_PARAD; Zinc finger, CCCH-type
STRINGcassava4.1_006608m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98334117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06410.11e-135C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]