PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G027235.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

NAC

Protein Properties

Length: 202aa MW: 22964.4 Da PI: 5.3149

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G027235.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	116.5	2.6e-36	9	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 lppGfrF Ptdeelvv++L++kv+ +++ +vi+++++y ++Pw+L+ k+ +e+++wyf+s++ +nr+t++gyWka g + HL.SW.v1.0.G027235.1 9 LPPGFRFYPTDEELVVHFLHRKVSLLPCHP-DVIPDLELYPYDPWELDGKALGEDNKWYFYSRKT--------QNRVTRNGYWKALGIE 88 79***********************999.99**********977778999*9974........5899******** PP NAM 90 kevlsk.kgelvglkktLvfykgrapkge.....ktdWvmheyrl 128 ++v + ++++vg+kk +vfy g+a++ + kt+W+mhe++l HL.SW.v1.0.G027235.1 89 EAVSGNnNTKKVGTKKYFVFYVGEAHNHNsgaaiKTNWIMHEFHL 133 98867888*******6554443333455*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.32E-46	6	171	IPR003441	NAC domain
PROSITE profile	PS51005	44.083	9	172	IPR003441	NAC domain
Pfam	PF02365	2.8E-24	10	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010089	Biological Process	xylem development
GO:0043067	Biological Process	regulation of programmed cell death
GO:0048367	Biological Process	shoot system development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence Send to blast
MGDNNNVNLP PGFRFYPTDE ELVVHFLHRK VSLLPCHPDV IPDLELYPYD PWELDGKALG 60 EDNKWYFYSR KTQNRVTRNG YWKALGIEEA VSGNNNTKKV GTKKYFVFYV GEAHNHNSGA 120 AIKTNWIMHE FHLSDSASTS SSSSSSSTRS SKRRSSNKID CSKWVLCRVY ERDDDDDGTE 180 LSCLDEVFLS LDDLDEISLP N*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-37	5	173	13	166	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-37	5	173	13	166	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-37	5	173	13	166	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-37	5	173	13	166	NO APICAL MERISTEM PROTEIN
3swm_A	2e-37	5	173	16	169	NAC domain-containing protein 19
3swm_B	2e-37	5	173	16	169	NAC domain-containing protein 19
3swm_C	2e-37	5	173	16	169	NAC domain-containing protein 19
3swm_D	2e-37	5	173	16	169	NAC domain-containing protein 19
3swp_A	2e-37	5	173	16	169	NAC domain-containing protein 19
3swp_B	2e-37	5	173	16	169	NAC domain-containing protein 19
3swp_C	2e-37	5	173	16	169	NAC domain-containing protein 19
3swp_D	2e-37	5	173	16	169	NAC domain-containing protein 19
4dul_A	2e-37	5	173	13	166	NAC domain-containing protein 19
4dul_B	2e-37	5	173	13	166	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269\|PubMed:18069942, ECO:0000269\|PubMed:20458494}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010103879.1	1e-108	NAC domain-containing protein 104 isoform X1
Swissprot	Q8GWK6	4e-82	NC104_ARATH; NAC domain-containing protein 104
TrEMBL	A0A2P5EXE3	1e-117	A0A2P5EXE3_TREOI; NAC domain containing protein
STRING	XP_010103879.1	1e-107	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1736	33	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64530.1	3e-74	xylem NAC domain 1

Publications ? help Back to Top
Zhao C, et al. XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED. New Phytol., 2017. 216(1): p. 76-89 [PMID:28742236] Tang N, et al. Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis. Nat Commun, 2018. 9(1): p. 3884 [PMID:30250259]