PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G027492.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

SBP

Protein Properties

Length: 172aa MW: 19243.2 Da PI: 9.1136

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G027492.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	133.5	6.9e-42	56	133	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cq+e+C adl++ak+yhrrhkvCe+hska+ v+vsgl+qrfCqqCsrfhe+sefDe+krsCrrrLa+hnerrrk++ HL.SW.v1.0.G027492.1 56 TCQAERCGADLNDAKRYHRRHKVCEFHSKASIVVVSGLRQRFCQQCSRFHEVSEFDEAKRSCRRRLAGHNERRRKSTV 133 6**************************************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	2.0E-34	50	118	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.351	54	131	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	8.24E-39	55	135	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	3.1E-31	57	130	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 172 aa Download sequence Send to blast
MDNNLIDTED EEVVGGGAES SSLIDKDKRK RGAVLQGRSS SSRASGAGGG DVSSPTCQAE 60 RCGADLNDAK RYHRRHKVCE FHSKASIVVV SGLRQRFCQQ CSRFHEVSEF DEAKRSCRRR 120 LAGHNERRRK STVESYGDAK TSKETQHCNR SEFDDQQKYL GSSYKHLHFR S*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	1e-36	56	130	10	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional factor. Binds to the promoter of the SQUAMOSA gene.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004146058.1	4e-55	PREDICTED: squamosa promoter-binding protein 1
Swissprot	Q38740	6e-42	SBP2_ANTMA; Squamosa promoter-binding protein 2
TrEMBL	A0A2P5AU48	6e-64	A0A2P5AU48_PARAD; SBP-box transcription factor
STRING	XP_004165557.1	1e-54	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF535	34	153

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15270.1	3e-41	squamosa promoter binding protein-like 5

Publications ? help Back to Top
Klein J,Saedler H,Huijser P A new family of DNA binding proteins includes putative transcriptional regulators of the Antirrhinum majus floral meristem identity gene SQUAMOSA. Mol. Gen. Genet., 1996. 250(1): p. 7-16 [PMID:8569690]