PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G027723.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family ERF
Protein Properties Length: 139aa    MW: 15646.4 Da    PI: 4.5464
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G027723.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.28.3e-1884133254
                   AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkle 54 
                            y+GVr+++ +g+++AeIrd    + k  r++lg+f++ae Aa a+++a+ +l+
  HL.SW.v1.0.G027723.1  84 SYRGVRRRP-WGKYAAEIRDsT--R-KGIRVWLGTFDSAEAAALAYDQAAFALR 133
                           69*******.**********32..2.24**********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.64E-1683119No hitNo description
PROSITE profilePS5103219.99484138IPR001471AP2/ERF domain
SMARTSM003801.2E-2184136IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.3E-2584133IPR001471AP2/ERF domain
PfamPF008471.0E-1284133IPR001471AP2/ERF domain
SuperFamilySSF541712.62E-1884133IPR016177DNA-binding domain
PRINTSPR003671.9E-108596IPR001471AP2/ERF domain
PRINTSPR003671.9E-10108124IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MESSFYFQFS PAAEESSFGN YSLESLSWSD LLSFNDTVVE ELVNPELQYD VVKEEPIEVT  60
SNPNDDVVGV LQNNKGNKEM TKKSYRGVRR RPWGKYAAEI RDSTRKGIRV WLGTFDSAEA  120
AALAYDQAAF ALRVLSFR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-22851371571Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017229963.19e-32PREDICTED: ethylene-responsive transcription factor 1B-like
TrEMBLA0A2P5E8976e-31A0A2P5E897_TREOI; AP2/ERF transcription factor
STRINGXP_010093429.19e-30(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06160.17e-19octadecanoid-responsive Arabidopsis AP2/ERF 59