PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G027741.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

TCP

Protein Properties

Length: 90aa MW: 9337.63 Da PI: 6.2106

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G027741.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	61	4.8e-19	1	57	24	80
TCP 24 lsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaessss 80 ++a caa++F+L +eLG+ +d +ti WLl a+p+i ++tg+++++++ +++ ss++ HL.SW.v1.0.G027741.1 1 MPAMCAAQIFQLSRELGHWSDDETIKWLLGHAQPSIVAATGSGTNPSRPVSTTSSVV 57 9*****************************************999997775555554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	15.426	1	39	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	2.5E-13	1	55	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 90 aa Download sequence Send to blast
MPAMCAAQIF QLSRELGHWS DDETIKWLLG HAQPSIVAAT GSGTNPSRPV STTSSVVPAY 60 APTNMVQPVS PMGGQGLFTM TAPPSCHLD*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022143970.1	3e-29	transcription factor TCP11
TrEMBL	A0A067JZ18	1e-27	A0A067JZ18_JATCU; Uncharacterized protein
STRING	cassava4.1_029119m	2e-27	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3819	33	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27010.1	2e-18	TCP family protein