PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G027790.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family MYB_related
Protein Properties Length: 242aa    MW: 26183.3 Da    PI: 4.5124
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G027790.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.62.8e-08200228129
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIar 29 
                           r++W++ Ed+ l+ av++ G g+W+ I r
  HL.SW.v1.0.G027790.1 200 RKPWSEAEDLELIAAVQKCGEGNWANILR 228
                           799***********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.927195242IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.8E-10197240IPR009057Homeodomain-like
SuperFamilySSF466893.8E-9197241IPR009057Homeodomain-like
PfamPF002491.2E-6200228IPR001005SANT/Myb domain
CDDcd116602.81E-11201242No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MVESSKKQTK GLISEEEIST LLHRYSATTV LTLLHEVSNC SDLKIDWNAL VEKTSTGISN  60
ANEYQMLWRH LAYRQSLLET FENGAGAQPM DDDSDLEYEL EAFPTLSGEP LAEAAACVKV  120
LIASGSSSDS IPCGSTVEAP LTINIPNGQS SRALEQSSCS MQGTNITVPV LVQKQPVPSA  180
TIADQDMTGL AGGNLHRRKR KPWSEAEDLE LIAAVQKCGE GNWANILRGD FKGDRTASQL  240
SQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010086659.11e-124uncharacterized protein LOC21386454 isoform X2
TrEMBLA0A2P5F1D71e-134A0A2P5F1D7_TREOI; GAMYB transcription factor
STRINGXP_010086659.11e-123(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31223256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.15e-70MYB_related family protein