PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G027812.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family ERF
Protein Properties Length: 194aa    MW: 22295 Da    PI: 8.3709
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G027812.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.13.9e-1269110351
                   AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                            +GV++ k + +W A I++      +k+++lg+ g+ eeAa+++++a+ 
  HL.SW.v1.0.G027812.1  69 MRGVYY-K-NMKWQAAIKVD-----KKQIHLGTVGSQEEAARLYDRAAF 110
                           79**96.5.7*********4.....5********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.0E-668111IPR001471AP2/ERF domain
SMARTSM003809.6E-568125IPR001471AP2/ERF domain
SuperFamilySSF541712.81E-869113IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.8E-670115IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MYCRSLFNLS LFCCAFYQNT SVKGGQGSTN VSDCGSLKEE HNQQVSGPPI KRRKRHRRKN  60
FQNQEQCLMR GVYYKNMKWQ AAIKVDKKQI HLGTVGSQEE AARLYDRAAF MCGREPNFEL  120
SEADKQELRQ FKWEEFLAMT RHAITHKKHR RRIGTEPEKS PEPSPLQNDD SDSKNEENDL  180
SGSEDVEADM SVS*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010104171.14e-85ethylene-responsive transcription factor-like protein At4g13040
RefseqXP_024026403.14e-85ethylene-responsive transcription factor-like protein At4g13040
SwissprotQ56XP92e-45ERFL1_ARATH; Ethylene-responsive transcription factor-like protein At4g13040
TrEMBLA0A2P5CEF41e-96A0A2P5CEF4_TREOI; AP2/ERF transcription factor
STRINGXP_010104171.11e-84(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54573253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13040.11e-47ERF family protein