PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G027829.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

HD-ZIP

Protein Properties

Length: 88aa MW: 10121.4 Da PI: 11.0262

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G027829.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	47.5	3e-15	38	87	1	50
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqN 50 r+++ ++++eq++ L + Fe+++++ e++ +LA++lg++ rqV vWFqN HL.SW.v1.0.G027829.1 38 RKRKMRLSEEQVNFLARNFESEQKLAPERKDRLASELGIDPRQVAVWFQN 87 788999*******************************************9 PP
2	HD-ZIP_I/II	66.5	6.1e-22	39	87	1	49
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqn 49 ++k rls+eqv++L ++Fe+e+kL perK +la+eLg++prqvavWFqn HL.SW.v1.0.G027829.1 39 KRKMRLSEEQVNFLARNFESEQKLAPERKDRLASELGIDPRQVAVWFQN 87 589*********************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.2E-14	25	87	IPR009057	Homeodomain-like
SuperFamily	SSF46689	8.13E-13	34	87	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.576	35	87	IPR001356	Homeobox domain
SMART	SM00389	3.0E-4	37	87	IPR001356	Homeobox domain
Pfam	PF00046	1.0E-12	38	87	IPR001356	Homeobox domain
CDD	cd00086	3.30E-8	38	87	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 88 aa Download sequence Send to blast
MSNAEMSNAG TSNAQRETKE TRRRKKNKSA KEESVPARKR KMRLSEEQVN FLARNFESEQ 60 KLAPERKDRL ASELGIDPRQ VAVWFQN*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	21	39	RRRKKNKSAKEESVPARKR
2	23	40	RKKNKSAKEESVPARKRK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269\|PubMed:16055682}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006383237.1	1e-19	homeobox-leucine zipper protein ATHB-40
Refseq	XP_009605338.1	2e-19	PREDICTED: homeobox-leucine zipper protein ATHB-40-like
Swissprot	O23208	3e-17	ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40
TrEMBL	B9MXR7	3e-18	B9MXR7_POPTR; Uncharacterized protein
TrEMBL	S8C296	8e-19	S8C296_9LAMI; Uncharacterized protein (Fragment)
STRING	POPTR_0005s12760.1	5e-19	(Populus trichocarpa)
STRING	XP_009605338.1	7e-19	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11011	22	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G18550.1	2e-18	homeobox protein 21

Publications ? help Back to Top
González-Grandío E, et al. Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254 [PMID:28028241]