PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G027952.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family MYB_related
Protein Properties Length: 122aa    MW: 14478.6 Da    PI: 10.4918
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G027952.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.52.6e-1764108147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           r rWT+eE+ ++++a k++G   W +I +++g ++t+ q++s+ qk+
  HL.SW.v1.0.G027952.1  64 RERWTEEEHNRFLEALKLYGRA-WQRIEEHIG-TKTAVQIRSHAQKF 108
                           78******************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.79E-1758113IPR009057Homeodomain-like
PROSITE profilePS5129419.74159113IPR017930Myb domain
TIGRFAMsTIGR015573.8E-1862111IPR006447Myb domain, plants
SMARTSM007177.3E-1363111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-964104IPR009057Homeodomain-like
PfamPF002491.8E-1464107IPR001005SANT/Myb domain
CDDcd001673.29E-966109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
AVPYLVLLTT TITTALLVIA FDSVRNHGKF SFYPLLVRED LKQRQLPRSD NGHTRKPYTI  60
TKQRERWTEE EHNRFLEALK LYGRAWQRIE EHIGTKTAVQ IRSHAQKFFS KVNWYLLTLS  120
SY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR8133165e-61KR813316.1 Betula platyphylla LHY mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007139035.18e-39hypothetical protein PHAVU_009G259600g
RefseqXP_007139036.18e-39hypothetical protein PHAVU_009G259600g
TrEMBLW9S4115e-54W9S411_9ROSA; Protein LHY
STRINGXP_010107134.19e-55(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29563372
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46830.11e-34circadian clock associated 1