PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G028007.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

WOX

Protein Properties

Length: 220aa MW: 24871.7 Da PI: 4.9076

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G028007.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	66.7	3.2e-21	80	140	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+++t+ ql++Le+ F + n +p++++++e++++l +++e++V++WFqNrRa+ k+ HL.SW.v1.0.G028007.1 80 RQRWSPTPLQLQILERIFDEgNGTPTKQKIKEITSELtqhgQISETNVYNWFQNRRARSKR 140 89***************99************************************97 PP
2	Wus_type_Homeobox	99.9	1.8e-32	79	142	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RW+Ptp Q++iLe+++++G tP+k++i++it+eL+++G+i+++NV++WFQNr+aR+++kq HL.SW.v1.0.G028007.1 79 SRQRWSPTPLQLQILERIFDEGNGTPTKQKIKEITSELTQHGQISETNVYNWFQNRRARSKRKQ 142 789***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.5E-17	76	145	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.289	76	141	IPR001356	Homeobox domain
SMART	SM00389	2.3E-13	78	145	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.89E-18	79	144	IPR009057	Homeodomain-like
CDD	cd00086	1.74E-14	80	142	No hit	No description
Pfam	PF00046	6.1E-19	80	140	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence Send to blast
MENESSKEEV ITGSGLFVKV MTDEQMELLR RQISVYATIC EKLAEMHKAI SAHHDLSGMK 60 LGALHCDPLM AYAGHKITSR QRWSPTPLQL QILERIFDEG NGTPTKQKIK EITSELTQHG 120 QISETNVYNW FQNRRARSKR KQSASAPNNM EPEAETETEF VKDNTKPEDT EFYDNSAPRD 180 HNNDVYFPSP EELISWSANG GVLELQSLPS WGGFNVDEL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	133	141	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00669	PBM	Transfer from GRMZM2G038252	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024020122.1	1e-113	WUSCHEL-related homeobox 8
Swissprot	Q5QMM3	2e-76	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	A0A2P5EY59	1e-132	A0A2P5EY59_TREOI; Homeodomain transcription factor
STRING	XP_010094567.1	1e-104	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1855	34	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	2e-61	WUSCHEL related homeobox 13

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]