PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G028124.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family ARF
Protein Properties Length: 662aa    MW: 73263.7 Da    PI: 8.1565
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G028124.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3703.1e-22124224198
                           EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                           f k+lt+sd+++ + +++pk++ae++       + ++ +  tl  +d + r W++++iyr++++r++lt+GW++Fv+ ++L  gD++vF
  HL.SW.v1.0.G028124.1 124 FAKTLTQSDANNGCGFSVPKQCAETIfppldysKDPPVQ--TLCAKDVHDRLWKFRHIYRGTPRRHLLTTGWSNFVNKKKLVCGDSIVF 210
                           89****************************995555444..9*********************************************** PP

                           EE-SSSEE..EEEEE- CS
                    B3  83 kldgrsefelvvkvfr 98 
                              + +++   v+++r
  HL.SW.v1.0.G028124.1 211 L--KANNGDVSVGIRR 224
                           *..4477777999988 PP
2Auxin_resp92.76.3e-31279362183
            Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                           aa+ a+++++FevvY+P a+t+ F+vk++ v++ +++++ +G+Rfkmafet+ ss+ ++ +Gtv++v+++dp+rWp+S Wr+L+
  HL.SW.v1.0.G028124.1 279 AANLAANGKPFEVVYYPTATTAAFCVKASVVHAVMRRHWFPGTRFKMAFETDYSSRVNWfMGTVSSVKEVDPSRWPRSLWRVLE 362
                           7899*****************************************************************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.4E-37119231IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.76E-29120226IPR015300DNA-binding pseudobarrel domain
CDDcd100171.20E-20122224No hitNo description
PROSITE profilePS5086311.519124226IPR003340B3 DNA binding domain
SMARTSM010191.0E-17124226IPR003340B3 DNA binding domain
PfamPF023629.1E-20124224IPR003340B3 DNA binding domain
PfamPF065071.4E-26279361IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 662 aa     Download sequence    Send to blast
MNGPGEGGER SNLIDPLLWH ACAGRLVHVP PLNSKAFYFP QGHAEHATTN ADCFTANRVP  60
SKILCRVNAV EFKADCLTDE VFTKISLVPV PSEEESDSDE ENENDASSGG VLSGNEGLEK  120
PKFFAKTLTQ SDANNGCGFS VPKQCAETIF PPLDYSKDPP VQTLCAKDVH DRLWKFRHIY  180
RGTPRRHLLT TGWSNFVNKK KLVCGDSIVF LKANNGDVSV GIRRVKRGNE RAEVESSSGW  240
NNSLSLGGLS RNQKRILNLN SYRNSGRVGR IRPESFIKAA NLAANGKPFE VVYYPTATTA  300
AFCVKASVVH AVMRRHWFPG TRFKMAFETD YSSRVNWFMG TVSSVKEVDP SRWPRSLWRV  360
LEVTWDDENF LQNVKRINPW LVQVTNTEYI QLSSFLPPRQ KYRLSQSQQS DITHEGGQLS  420
LSSPLGNSLG LSNPLGYPSN NTPASIQGAR QILLFGQCID IGQKHCNSPP SFSQVTDGRA  480
AEYENTDTER SPSNNSGPTL HPTGNAFLID QTRASEGLSS FLTIGNSGQS LERSNNAGNN  540
PVVLFGQRID IGQKNCDIPP SFSQVTAAEY ETTGTERSPY DSGPTPQPTE NGLNLGHRKI  600
FIESNDSGLT NGISFLGSYE GLFKNLSDSY QTEGSQMQNP RLYENSEKPK YFYSSRKQKL  660
W*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-73638743392Auxin response factor 5
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023882698.10.0auxin response factor 18
RefseqXP_023882705.10.0auxin response factor 18
TrEMBLA0A2P5FTV90.0A0A2P5FTV9_TREOI; Auxin response factor
STRINGEMJ095380.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3209422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.11e-150auxin response factor 16