PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G028143.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family RAV
Protein Properties Length: 354aa    MW: 39994 Da    PI: 5.4973
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G028143.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP227.11e-084692254
                   AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54
                          +ykG     ++g W A+I+       + +r++lg+f  ++eAa a++ a+ +l+
  HL.SW.v1.0.G028143.1 46 KYKGTVK-QQNGHWGAQIYI------NhQRIWLGTFKLEKEAAMAYDSAAIRLR 92
                          5666543.44799****999......44**********99**********9986 PP
2B390.41.4e-28169271188
                           EEEE-..-HHHHTT-EE--HHH.HTT...............---.....--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHH CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...............ggkke...esktltledesgrsWevkliyrkksgryvltkGWkeFvka 71 
                           f+k+ltpsdv+k++rlv+pkk+a ++               +        ++++ + d s rsW+++++y+k+s+++v+t+GW++Fvk+
  HL.SW.v1.0.G028143.1 169 FQKELTPSDVGKLNRLVIPKKYAIKYlpripeesleekeshE---DgmvDGMEMEFHDHSMRSWKFQYSYWKSSQSFVFTRGWSQFVKE 254
                           99**************************99998876655552...0555899************************************* PP

                           HT--TT-EEEEEE-SSS CS
                    B3  72 ngLkegDfvvFkldgrs 88 
                           +gLk++D++ F+l++r+
  HL.SW.v1.0.G028143.1 255 KGLKANDTIAFYLSKRR 271
                           ************98763 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.50E-2045103No hitNo description
PROSITE profilePS5103216.42346101IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-1446102IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.4E-1546101IPR001471AP2/ERF domain
SMARTSM003801.0E-1646107IPR001471AP2/ERF domain
PfamPF008471.5E-44692IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.9E-30166272IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.62E-28167270IPR015300DNA-binding pseudobarrel domain
CDDcd100173.38E-27168270No hitNo description
PROSITE profilePS5086312.323169289IPR003340B3 DNA binding domain
PfamPF023626.4E-26169271IPR003340B3 DNA binding domain
SMARTSM010193.7E-22169276IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MADDISSIVL NGVVNGIQEA ADFNGSVHSL PPSKGAKTGS KTFLTKYKGT VKQQNGHWGA  60
QIYINHQRIW LGTFKLEKEA AMAYDSAAIR LRCGDTYRNF PWTKAATEES KFQKHYSTEI  120
LINMIRDGSY QTKFEDFLRN TCLENLENEA SLGVGNVNKG EVLFKQLLFQ KELTPSDVGK  180
LNRLVIPKKY AIKYLPRIPE ESLEEKESHE DGMVDGMEME FHDHSMRSWK FQYSYWKSSQ  240
SFVFTRGWSQ FVKEKGLKAN DTIAFYLSKR RDVSNEKDAE VFSMIEVVED NSGLLIEGEG  300
AEHSFLGVNF GKDCHKQVEA GEEEDGETVM EEASNEIPKA ANSGFRLFGV QII*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A5e-2716627211107DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024030541.11e-114AP2/ERF and B3 domain-containing transcription factor At1g50680
SwissprotQ9C6P55e-90RAVL2_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g50680
TrEMBLA0A2P5F3D71e-176A0A2P5F3D7_TREOI; AP2/ERF transcription factor
STRINGXP_006473975.11e-108(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50003156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.18e-88RAV family protein