PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G028600.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family MYB_related
Protein Properties Length: 212aa    MW: 23779.4 Da    PI: 9.7433
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G028600.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.72.7e-181484147
                          TSSS-HHHHHHHHHHHHHTTTT.........................-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.........................tWktIartmgkgRtlkqcksrwqky 47
                          +g+WT+eEd++l++++k++G g                          W++Ia++++ gRt++++k++w+++
  HL.SW.v1.0.G028600.1 14 KGAWTKEEDQRLIHYIKLHGEGcwrslpkaaepisertsllfsnqelKWSLIASRLP-GRTDNEIKNYWNTH 84
                          79*******************************************************.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-21591IPR009057Homeodomain-like
PROSITE profilePS5129418.332989IPR017930Myb domain
SMARTSM007178.9E-171387IPR001005SANT/Myb domain
SuperFamilySSF466892.52E-131486IPR009057Homeodomain-like
PfamPF002492.9E-81442IPR001005SANT/Myb domain
CDDcd001672.74E-121685No hitNo description
PfamPF002494.5E-76184IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MGRSPCCEKE HTNKGAWTKE EDQRLIHYIK LHGEGCWRSL PKAAEPISER TSLLFSNQEL  60
KWSLIASRLP GRTDNEIKNY WNTHIKRKLY SRGIDPQTHR PLLLVPTNKT TTSTTTISST  120
STSTPHLLST KTRTSTSSNS SSSSSDHDHH QNNKLIMFNN TMPNPKLHHH VTTIERTSSA  180
TAATTDQFYS NMTMAMSSTT SCTTSANNNS TD
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene, asbscisic acid (ABA), auxin (IAA), and Pseudomonas syringae pv. phaseolica. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025012074.11e-56myb-related protein 308-like
SwissprotQ388516e-50MYB6_ARATH; Transcription repressor MYB6
TrEMBLA0A2P5AGF66e-53A0A2P5AGF6_PARAD; MYB transcription factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.17e-48myb domain protein 4