PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G028754.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family Trihelix
Protein Properties Length: 255aa    MW: 28761.7 Da    PI: 9.7199
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G028754.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix37.94.7e-122090167
              trihelix  1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergfe..rspkqCkekwenlnkrykkikeg 67
                          +W++  + +Liea  ++  +l+rg+l++++W+ev++++  r+ g++  ++ +qCk++ + l+k+yk +k  
  HL.SW.v1.0.G028754.1 20 CWSEGATETLIEAWGDRYLQLNRGNLRQKDWKEVAEAVngRDNGLKpyKTDVQCKNRVDTLKKKYKLEKSK 90
                          7*************************************99888885337*****************98865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.7E-2518104No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010468Biological Processregulation of gene expression
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MDRPGKTTAT RPHAGGREDC WSEGATETLI EAWGDRYLQL NRGNLRQKDW KEVAEAVNGR  60
DNGLKPYKTD VQCKNRVDTL KKKYKLEKSK PLPSAWAFYP RLDFLIGSTN KKPTTVTLTI  120
KSAKPTTSRP GPKPPAYLAR SPDSSPENDD NVEEDDGDGG GFNGTRVVMR KHRMEAVDLS  180
DGAACRELAR AILKFGEIYE RIESSKQQKM MELEKERMEF AKELESQRLN MFMDAQLELE  240
KMKRAKYAPG SGKK*
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024027329.11e-104trihelix transcription factor ASIL2 isoform X4
SwissprotQ9LJG82e-36ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA0A2P5E0G81e-117A0A2P5E0G8_PARAD; Sequence-specific DNA binding transcription factor
STRINGXP_010105432.11e-103(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18873379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05550.11e-68sequence-specific DNA binding transcription factors