PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G028913.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family MYB
Protein Properties Length: 301aa    MW: 33277.2 Da    PI: 8.1996
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G028913.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.41.9e-141462148
                          TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                          rg+W++eEd  l+++ +  G+g +W + +++ g++R++k+c++rw++yl
  HL.SW.v1.0.G028913.1 14 RGPWSPEEDAALKHYMHNNGTGgNWIALPHKAGLNRCGKSCRLRWLNYL 62
                          89*********************************************97 PP
2Myb_DNA-binding31.44.4e-1070147346
                           SS-HHHHHHHHHHHHHTTTT...................................-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...................................tWktIartmgkgRtlkqcksrwqk 46 
                            +T+eEd  +  +    G++                                   +W+ Ia+ ++ gRt++++k++w++
  HL.SW.v1.0.G028913.1  70 GFTEEEDNVIWTLYSNIGSRqvqfffssclsnslsrsyiylcqafmnitmglvliRWSVIASQLP-GRTDNDVKNHWNT 147
                           589999999999999999999999999999999999999999999999999**************.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.386966IPR017930Myb domain
SMARTSM007176.7E-101364IPR001005SANT/Myb domain
PfamPF002491.1E-131462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-221568IPR009057Homeodomain-like
SuperFamilySSF466895.85E-181591IPR009057Homeodomain-like
CDDcd001676.40E-71662No hitNo description
PROSITE profilePS500908.30463149IPR017877Myb-like domain
SMARTSM007171.1E-567151IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-196989IPR009057Homeodomain-like
SuperFamilySSF466892.84E-870150IPR009057Homeodomain-like
PfamPF002492.7E-771147IPR001005SANT/Myb domain
CDDcd001672.38E-6124149No hitNo description
Gene3DG3DSA:1.10.10.601.2E-19125153IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MGRAPCCDKT KVKRGPWSPE EDAALKHYMH NNGTGGNWIA LPHKAGLNRC GKSCRLRWLN  60
YLRPDIKHGG FTEEEDNVIW TLYSNIGSRQ VQFFFSSCLS NSLSRSYIYL CQAFMNITMG  120
LVLIRWSVIA SQLPGRTDND VKNHWNTKLK KKLLARSTSS NETTNTTDHL NLARFSPLIP  180
KTENSEQGNS AYCYTNSDTL PYLMNGNCVQ NFDLKKPSKP SYSSNPVQVS DFGTNGNTSS  240
SISSTREASS LSTSSSTLAM ENYTNFASWS GTGIESIEDG ILVDLGFDSS NDVFLSGFGF  300
*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ8768820.0AJ876882.1 Humulus lupulus mRNA for Myb-like protein (myb1 gene), variety Osvald's 72.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008337621.21e-92transcription factor MYB36-like
SwissprotQ9FKL21e-62MYB36_ARATH; Transcription factor MYB36
TrEMBLQ4A3I71e-171Q4A3I7_HUMLU; Myb-like protein
STRINGXP_008337621.19e-91(Malus domestica)
STRINGXP_008352348.19e-91(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36890.14e-63MYB family protein
Publications ? help Back to Top
  1. Fernández-Marcos M, et al.
    Control of Arabidopsis lateral root primordium boundaries by MYB36.
    New Phytol., 2017. 213(1): p. 105-112
    [PMID:27891649]