PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G028925.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family B3
Protein Properties Length: 195aa    MW: 21870.2 Da    PI: 9.7002
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G028925.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.77.8e-1768165198
                           EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE......EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy....rkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                           f+ v  ps+v +++ l +p +fa   ++k+ +    +l  ++g sW +++++    +++  r  ++ GW eFv++n+Lk+gD+++F+l 
  HL.SW.v1.0.G028925.1  68 FKIVIQPSYVDSRHGLNVPLNFA-MTQLKE-G--AAILSILNGGSWPIQFQMrhikTNGEMRADFRCGWIEFVRDNDLKVGDVCIFELL 152
                           44456799***************.455554.3..3566667777776666555565888888*************************99 PP

                           SSSEE..EEEEE- CS
                    B3  86 grsefelvvkvfr 98 
                           ++s+  ++v+++r
  HL.SW.v1.0.G028925.1 153 NKSDNLFRVSIVR 165
                           8888878888877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-1761166IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.87E-1963168IPR015300DNA-binding pseudobarrel domain
CDDcd100171.58E-1866165No hitNo description
PROSITE profilePS5086313.60668167IPR003340B3 DNA binding domain
SMARTSM010191.1E-1068167IPR003340B3 DNA binding domain
PfamPF023621.2E-1469166IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MGAGGLELKD AMDVETVMPN SLDNLSTKKG NGRLTTRPTP KKKQPHFSVI EKAKLLERVH  60
FKSEYPFFKI VIQPSYVDSR HGLNVPLNFA MTQLKEGAAI LSILNGGSWP IQFQMRHIKT  120
NGEMRADFRC GWIEFVRDND LKVGDVCIFE LLNKSDNLFR VSIVRAADDA YHQKSQAGAT  180
KPKVEVGEKV TEFF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2P5FY145e-47A0A2P5FY14_TREOI; B3 DNA binding domain containing protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1608859
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-13B3 family protein