PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G028926.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family B3
Protein Properties Length: 516aa    MW: 58564.3 Da    PI: 9.3994
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G028926.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.51.6e-1524114198
                           EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                           ffk+++ +  ++s+ l +pkkf++++g+  + s  + ++ + g +W+++l  +kk++ ++++kGW +F+k   +k g ++ F+++g+se
  HL.SW.v1.0.G028926.1  24 FFKIFLEEILGESK-LHIPKKFTRKYGE--TLSDSVLVKLPCGSKWKMEL--TKKDENIWFEKGWLDFAKHYAIKRGSMISFEYEGNSE 107
                           77888777777776.***********94..58889***************..**********************************999 PP

                           E..EEEEE- CS
                    B3  90 felvvkvfr 98 
                           f   v +f+
  HL.SW.v1.0.G028926.1 108 F--SVVIFD 114
                           9..777776 PP
2B363.63.1e-20249349199
                           EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                           ffkv +++++   +++ +p +fa+++ g++ ++  l+l +  gr+W+v++++   +k+ +  +++ W+ Fv++n+L++gD++vF + ++
  HL.SW.v1.0.G028926.1 249 FFKVVMQPYYVHGHLMNIPGSFAKKYIGPTCSNAILKLANGCGRTWSVQYKFgvYNKGISSRFQASWRAFVQDNNLRVGDVCVFVMLED 337
                           99************************8888888999**************998877777789***********************8888 PP

                           SEE..EEEEE-S CS
                    B3  88 sefelvvkvfrk 99 
                            + ++ v +fr+
  HL.SW.v1.0.G028926.1 338 INLTFEVVIFRA 349
                           888889999886 PP
3B341.72.1e-134104901796
                           E--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                    B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                            +p kfa +h  k+ +    +l  ++g sW +++++   +++g+  +  + GWkeF+++n+Lk+gD+++F+l ++s+  ++v++
  HL.SW.v1.0.G028926.1 410 NVPSKFAMKHL-KEGG--AAILSISNGGSWPIQFQMrhVNTRGGfrVECRCGWKEFARDNDLKVGDVCIFELLNKSDNLFRVSI 490
                           579****9994.3333..56777788999988776655555555346677*********************9877777566666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.69E-2117116IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.4E-2117116IPR015300DNA-binding pseudobarrel domain
CDDcd100174.11E-1523114No hitNo description
PROSITE profilePS5086313.18323116IPR003340B3 DNA binding domain
PfamPF023625.6E-1324114IPR003340B3 DNA binding domain
SMARTSM010196.9E-1424116IPR003340B3 DNA binding domain
SuperFamilySSF1019361.61E-19243350IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.7E-21244350IPR015300DNA-binding pseudobarrel domain
CDDcd100173.63E-20249348No hitNo description
PROSITE profilePS5086313.634249350IPR003340B3 DNA binding domain
PfamPF023623.2E-17249349IPR003340B3 DNA binding domain
SMARTSM010191.1E-10249350IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.0E-14392492IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.2E-6398494IPR003340B3 DNA binding domain
SuperFamilySSF1019363.73E-13405492IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.547411494IPR003340B3 DNA binding domain
PfamPF023623.5E-11411489IPR003340B3 DNA binding domain
CDDcd100175.33E-14411490No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 516 aa     Download sequence    Send to blast
MSGGSLGDLG DSEKNVFSSS HCRFFKIFLE EILGESKLHI PKKFTRKYGE TLSDSVLVKL  60
PCGSKWKMEL TKKDENIWFE KGWLDFAKHY AIKRGSMISF EYEGNSEFSV VIFDLSTVEI  120
DYPTIPTNLV GTNIDSELKI PKREVVEEDS IETLDVYSSP CSQPHKKMRT QSNLSCRKLE  180
SETKGMEKFY FVTYYAFLIF NKILARKHNL HHAPTPPTCD ILRQMKPSSG RDEVEALQKA  240
GYFKSSRPFF KVVMQPYYVH GHLMNIPGSF AKKYIGPTCS NAILKLANGC GRTWSVQYKF  300
GVYNKGISSR FQASWRAFVQ DNNLRVGDVC VFVMLEDINL TFEVVIFRAS RNSKTFMSPE  360
LKDAMDDETV MGSSLDNLSM KQAHRLGKKP PKRQQPHFSV IEKAKLLDRN VPSKFAMKHL  420
KEGGAAILSI SNGGSWPIQF QMRHVNTRGG FRVECRCGWK EFARDNDLKV GDVCIFELLN  480
KSDNLFRVSI VGAADDSYHQ KSQAGATKPK VEVGVE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A9e-1322935028143B3 domain-containing transcription factor VRN1
4i1k_B9e-1322935028143B3 domain-containing transcription factor VRN1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-36B3 family protein