PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G028927.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family B3
Protein Properties Length: 265aa    MW: 30402.1 Da    PI: 9.9058
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G028927.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.85.3e-1534122498
                           E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                    B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                           +l++ ++++ + + +pkkf++++g  ++ s    ++ + g +W+++l  +kk++ ++++kGW +F+k   +k g ++ F+++g+s+f  
  HL.SW.v1.0.G028927.1  34 KLVRISSFSFSVFHIPKKFISKYG--ETLSNSALVKPPCGSKWKMEL--TKKDKNIWFEKGWLDFAKHYAIKRGSMISFRYEGNSNF-- 116
                           5677788888889**********9..458889***************..**********************************9999.. PP

                           EEEEE- CS
                    B3  93 vvkvfr 98 
                            v +f+
  HL.SW.v1.0.G028927.1 117 SVVIFD 122
                           777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.8E-2114124IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-1916131IPR015300DNA-binding pseudobarrel domain
CDDcd100178.95E-1219122No hitNo description
PROSITE profilePS5086312.40731124IPR003340B3 DNA binding domain
PfamPF023624.1E-1235122IPR003340B3 DNA binding domain
SMARTSM010195.7E-535124IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MSGGSLGHSK QTIFSSSTPH FFKIIFQETL QQNKLVRISS FSFSVFHIPK KFISKYGETL  60
SNSALVKPPC GSKWKMELTK KDKNIWFEKG WLDFAKHYAI KRGSMISFRY EGNSNFSVVI  120
FDLSTVEIDY PIPSNLVGSN IDSELKIPKR KVVEEDSIEN LDEYSSPCSQ PHKKMRTQSN  180
PSCLKLESET KGMEKFYFGT YYAFLSLNKM LGSTTFLLQP DRGRLEEMKL KLFRRLLVSI  240
LDDHFSRLSC SHAMFTVTKW QASF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2P5FY129e-71A0A2P5FY12_TREOI; B3 DNA binding domain containing protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-24B3 family protein