PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G029031.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

C3H

Protein Properties

Length: 149aa MW: 16588.6 Da PI: 8.4713

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G029031.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.4	1.9e-06	60	76	11	27
GTS--TTTTT-SS-SSS CS zf-CCCH 11 rtGtCkyGdrCkFaHgp 27 r+G+C+yGd+Ck+ H++ HL.SW.v1.0.G029031.1 60 RFGICQYGDSCKYFHPK 76 89*************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00451	0.0045	3	38	IPR003604	Zinc finger, U1-type
SuperFamily	SSF57667	5.95E-16	4	59	No hit	No description
Pfam	PF06220	3.1E-9	5	37	IPR013085	Zinc finger, U1-C type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 149 aa Download sequence Send to blast
MPLGKYHCDY CDKEFQDSPF ARKRHLQGLQ HLRAKALWYD SFKDPNQVYT EGFGNGVCNR 60 FGICQYGDSC KYFHPKTTVQ NLNNSQGRSG FAGSNQSPIF QGNQIIGSNS MSGDMVRDRM 120 GISWGNLPPS LKPPPEGGYP SLPFVDWG*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024022720.1	5e-83	zinc finger CCCH domain-containing protein 3 isoform X1
Swissprot	Q0JP11	4e-41	C3H3_ORYSJ; Zinc finger CCCH domain-containing protein 3
TrEMBL	A0A2P5FKJ0	2e-83	A0A2P5FKJ0_TREOI; Zinc finger protein
STRING	VIT_14s0060g00610.t01	6e-72	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11959	28	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26749.1	2e-47	C3H family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]