PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G029132.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family MYB_related
Protein Properties Length: 565aa    MW: 64115.8 Da    PI: 5.5592
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G029132.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.52e-10436484348
                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
       Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                           +WT+eE  +lv++v q G g+W+ I r +     +Rt  ++k++w+++l
  HL.SW.v1.0.G029132.1 436 SWTPEEVVKLVEGVSQCGVGRWTEIKRLLFsssSHRTSVDLKDKWRNLL 484
                           5**********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.3E-13426489IPR009057Homeodomain-like
PROSITE profilePS5129418.091429488IPR017930Myb domain
SuperFamilySSF466894.24E-16431492IPR009057Homeodomain-like
SMARTSM007176.1E-11433486IPR001005SANT/Myb domain
PfamPF002495.1E-8436484IPR001005SANT/Myb domain
CDDcd116608.16E-19437485No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 565 aa     Download sequence    Send to blast
MFSCKPYEVD SDMPIFVDEP VGLEHFLVEP LSKEDWVSDL LDLDAFQIEK CFNIEDISGT  60
FDYDQIKLDA DADHSMTTKG DGKNTELPSD KFQGINIGVR EEYHIDTTLT DKACTFDYGN  120
CKEMGNGGLE NQFQGFHRRD SGNEMVDLSS TNIPVLKYTS NHHSSLLDQV RAKELHEAFN  180
SMSGQEPLME KSWSKKDNLY GFSNYAELDS TLSLFKVEAT SNVNEGETTF SSLVEYSGSA  240
TGHVPGMLHN ERNSENQQMK RKRVDGCESL KTSTSAVKVE LCSLDEGDLA GLLVSPKRSR  300
KPPRRYIEES LDYESRSHNR KCGISRKLKD RILHDRYQKY KWQQKEFHAE VVYEDDSFNG  360
GCIQVPFGLP MEKENPKKNK YFLGPEYSKD NGLLDQLEKH DIEPFSVESQ EDISEDECVL  420
RSSTQKVNTR RKRHISWTPE EVVKLVEGVS QCGVGRWTEI KRLLFSSSSH RTSVDLKDKW  480
RNLLRASCTQ LQIKEKVGLK LVEQNRKQAS TNYVPESILC RVRELAVVYP YPRESRSKDS  540
CTVPAVSSFS ASSSNALVPL STVV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024029955.10.0uncharacterized protein LOC21390901
RefseqXP_024029956.10.0uncharacterized protein LOC21390901
TrEMBLA0A2P5CZU50.0A0A2P5CZU5_PARAD; Octamer-binding transcription factor
STRINGXP_010109483.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF150181313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.12e-24TRF-like 6