PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G029630.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family G2-like
Protein Properties Length: 446aa    MW: 49428.8 Da    PI: 6.2041
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G029630.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.36.1e-32230284155
               G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                           k r+rWt+eLHe+Fv av+ LGG+e+AtPk il+lmkv+gLt++hvkSHLQkYR+
  HL.SW.v1.0.G029630.1 230 KSRMRWTQELHEAFVGAVNALGGNERATPKGILNLMKVPGLTIYHVKSHLQKYRT 284
                           68****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.448227287IPR017930Myb domain
SuperFamilySSF466898.06E-17228284IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.6E-30228286IPR009057Homeodomain-like
TIGRFAMsTIGR015576.7E-24230284IPR006447Myb domain, plants
PfamPF002497.6E-8232283IPR001005SANT/Myb domain
PfamPF143793.6E-12315354IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MSLSFPVGST PIDDKYTKLP DTYQVSSQRK IMMNSSTRQA PPLSSSAGSS GQFFSSSSRL  60
PSDVHVPISS VSPHERRPFH SLAPQSSGGM PPVHSSLSER QSTAFIDHVV ENNDISWCPD  120
SIHDLLDFPE MVSVQNDQVE ASSVAVRSQD HNEKNDWPDW QMIAIGEDLD QLWPDLPVSV  180
NPIATDSKPE GCIQSVDASV QQIQNYQQPS LQCGEHATTP DPLCNASSTK SRMRWTQELH  240
EAFVGAVNAL GGNERATPKG ILNLMKVPGL TIYHVKSHLQ KYRTARYKPE LSEGTNEKKS  300
PTAEDVRSQE LSTSMGITEA LRLQVELQKR LHEQLELQIE EQGKYLEKMF DRHKRMETKS  360
KASSSTSHDH KDPLSKVPEN NKSKVSEDAS SKTGISSSNA KSKPDKSFID PSEKGKAHDE  420
TKTWGEREPG NEESDVQPTK RARCE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A9e-28230288260Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B9e-28230288260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A9e-28230288260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C9e-28230288260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D9e-28230288260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F9e-28230288260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H9e-28230288260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J9e-28230288260Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010102208.11e-180protein PHR1-LIKE 1 isoform X2
TrEMBLA0A2P5A6T30.0A0A2P5A6T3_TREOI; Octamer-binding transcription factor
STRINGXP_010102208.11e-179(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15123498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G29000.27e-59G2-like family protein