PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G029910.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

GRAS

Protein Properties

Length: 237aa MW: 26387.2 Da PI: 7.1805

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G029910.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	277.1	5.4e-85	1	235	129	374
GRAS 129 lqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldes 217 +qaL++R++g+p lRiTgvgs s ++++etg+ L+++A++l+vpfef++ v ++ledl++++++ + gEalaVn+v +lhr++ HL.SW.v1.0.G029910.1 1 MQALSARSGGSPFLRITGVGS----SLDSVRETGRCLTELAHSLQVPFEFHA-VGEQLEDLKPHMFQRRVGEALAVNSVNRLHRVP--- 81 9******************....9**********************.7***************************9... PP GRAS 218 vsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerr 306 ++ ++L ++++ P++v++veqea+hn++ Fl rfleal+yysa+fdsl+a++p+es +r+kvE+ ++++ei+n+va eg er+ HL.SW.v1.0.G029910.1 82 GNFL---GNLLAMIRDQAPNIVTLVEQEASHNGPYFLGRFLEALHYYSAIFDSLDATFPAESAQRAKVEQYIFAPEIRNIVAFEGPERI 167 4443...47**************************************************************************** PP GRAS 307 erhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 erhe+l kWr+ +e GFk vpls +a++q k ll ++ +gyr+ e++g+l+lgW+drpL+++SaWr HL.SW.v1.0.G029910.1 168 ERHERLDKWRKLMEGKGFKGVPLSANAVTQSKILLGLYSCEGYRLTEDNGCLLLGWMDRPLIAASAWR 235 *****************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03514	1.8E-82	1	235	IPR005202	Transcription factor GRAS
PROSITE profile	PS50985	40.265	1	215	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MQALSARSGG SPFLRITGVG SSLDSVRETG RCLTELAHSL QVPFEFHAVG EQLEDLKPHM 60 FQRRVGEALA VNSVNRLHRV PGNFLGNLLA MIRDQAPNIV TLVEQEASHN GPYFLGRFLE 120 ALHYYSAIFD SLDATFPAES AQRAKVEQYI FAPEIRNIVA FEGPERIERH ERLDKWRKLM 180 EGKGFKGVPL SANAVTQSKI LLGLYSCEGY RLTEDNGCLL LGWMDRPLIA ASAWRC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	2e-60	4	234	150	378	Protein SCARECROW
5b3h_A	2e-60	4	234	149	377	Protein SCARECROW
5b3h_D	2e-60	4	234	149	377	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that functions in mycorrhizal specific signaling (PubMed:23122845). Required for Myc factor signaling from mycorrhizal fungi, but has no function in Nod factor signaling from rhizobial bacteria (PubMed:23122845). Regulates the expression of RAM2, a glycerol-3-phosphate acyl transferase that promotes cutin biosynthesis to enhance mycorrhizal hyphopodia formation (PubMed:23122845). {ECO:0000269\|PubMed:23122845}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced in roots during colonization by arbuscular mycorrhizal fungi. {ECO:0000269\|PubMed:23122845}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024933321.1	1e-154	DELLA protein RGL1-like
Swissprot	G7L166	1e-154	RAM1_MEDTR; GRAS family protein RAM1
TrEMBL	A0A2P5CJP5	1e-160	A0A2P5CJP5_PARAD; GRAS transcription factor
STRING	AES78313	1e-152	(Medicago truncatula)
STRING	AES78316	1e-152	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9470	32	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66350.1	1e-64	RGA-like 1

Publications ? help Back to Top
Tang H, et al. An improved genome release (version Mt4.0) for the model legume Medicago truncatula. BMC Genomics, 2014. 15: p. 312 [PMID:24767513] Pecrix Y, et al. Whole-genome landscape of Medicago truncatula symbiotic genes. Nat Plants, 2018. 4(12): p. 1017-1025 [PMID:30397259]