PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G030096.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family MIKC_MADS
Protein Properties Length: 106aa    MW: 12110.2 Da    PI: 9.5183
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G030096.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF75.25.2e-24955147
                          S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
                SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                          k+ien+snr vt++kR++gi+KKA E+ +LCd++v++ii+s +gk+ 
  HL.SW.v1.0.G030096.1  9 KKIENTSNRAVTYAKRKAGIFKKAREIAILCDVKVSLIIVSGSGKMD 55
                          78******************************************996 PP
2K-box16.73e-0771106136
                 K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqR 36 
                           y+k+s+++l+ ak+e+l++e++ +kke+en+  e+R
  HL.SW.v1.0.G030096.1  71 YHKHSKEKLWPAKHENLYNEIEMVKKENENMVIELR 106
                           78999999***********************98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.2E-33160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006627.221161IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.62E-29295IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-21323IPR002100Transcription factor, MADS-box
PfamPF003194.6E-201054IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-212338IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-213859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 106 aa     Download sequence    Send to blast
MGRGKIEIKK IENTSNRAVT YAKRKAGIFK KAREIAILCD VKVSLIIVSG SGKMDAMCSP  60
DNSLSTICEE YHKHSKEKLW PAKHENLYNE IEMVKKENEN MVIELR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may play role in specifying stamen and petal organ identity. {ECO:0000269|PubMed:23181568, ECO:0000269|Ref.1, ECO:0000305|PubMed:17920788}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021902590.12e-45floral homeotic protein PMADS 2
SwissprotQ0HA257e-43MADS9_VITVI; Agamous-like MADS-box protein MADS9
TrEMBLA5JSC74e-44A5JSC7_CARPA; B-class MADS-box protein PI
STRINGevm.model.supercontig_26.3166e-45(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43553255
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.11e-40MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]