PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G030108.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family ERF
Protein Properties Length: 194aa    MW: 21326.7 Da    PI: 5.287
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G030108.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.96e-192070155
                   AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                          s y+GVr +k +g+Wv+eIr+p   gk++r++lg+f t+e+Aa+a++ a++ ++g
  HL.SW.v1.0.G030108.1 20 SIYRGVRKRK-WGKWVSEIREP---GKKTRIWLGSFETPEMAAAAYDVAALHFRG 70
                          57*****999.**********8...557***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.1E-122070IPR001471AP2/ERF domain
CDDcd000181.53E-232080No hitNo description
SuperFamilySSF541715.36E-232079IPR016177DNA-binding domain
SMARTSM003808.0E-382184IPR001471AP2/ERF domain
PROSITE profilePS5103223.7232178IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.9E-322179IPR001471AP2/ERF domain
PRINTSPR003674.0E-102233IPR001471AP2/ERF domain
PRINTSPR003674.0E-104460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MGEPSINNNN FMGNHGAASS IYRGVRKRKW GKWVSEIREP GKKTRIWLGS FETPEMAAAA  60
YDVAALHFRG REARVNFPHL VDCLPRPVSS SSEDIRIAAH EAAVRLRSGG VGPSTAEEFG  120
GSTSGGMGMA PITVRLSPSQ IQAINESPLD SPKMWMQMVE ESAVFGFNDG EDNDQYWDHG  180
DYQDMHNDSL WDP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-162282667ATERF1
3gcc_A2e-162282667ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00227DAPTransfer from AT1G71450Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004141635.11e-86PREDICTED: ethylene-responsive transcription factor ERF021
SwissprotQ9C9I29e-57ERF21_ARATH; Ethylene-responsive transcription factor ERF021
TrEMBLA0A2P5D4W21e-102A0A2P5D4W2_PARAD; AP2/ERF domain containing protein
STRINGXP_004141635.15e-86(Cucumis sativus)
STRINGXP_004156249.15e-86(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17773191
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.14e-59ERF family protein