PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G030211.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family LSD
Protein Properties Length: 138aa    MW: 14712.8 Da    PI: 4.7147
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G030211.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD127.45.8e-0999116118
               zf-LSD1   1 CggCrtlLsYPrGApsVR 18 
                           Cg+CrtlL YP+GA+ V+
  HL.SW.v1.0.G030211.1  99 CGHCRTLLKYPPGARQVH 116
                           ***************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010532.0E-896115IPR005735Zinc finger, LSD1-type
PfamPF069431.2E-699115IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MEINQVDEDE DEGPPPGYQS ILPSPQPQPP PPSSPLQLAP QPPPPPLPPS SPLRLASEPP  60
PPPSSSPLKL APEPPPPMPT TGLTPMLKTT SFEIAQMICG HCRTLLKYPP GARQVHNERP  120
PWSVQQGQPP PGPNQCY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-